rs13462799 SNP Detail

Summary

• ID
  rs13462799
• Variation Type
  SNP
• Alleles
  C/T

• Created in dbSNP Build
  121
• Last Updated in dbSNP Build
  138
• Additional Resources
  JBrowse Genome Browser | Ensembl SNPView | UCSC Browser | Alliance Variant
  

Genome Location and Flanking Sequence

• Location
  Chr2:119068675 (GRCm39)
• SNP Orientation to the Genome
  forward

• SNP Reference Flanking Sequence

                                        AGGAG GGCTTCATCA ACTATCTTAC
  Y
  CAGGAGCTTT ACCGCTCCTA CCGCG                                      
  
  Y = C/T
  

  
  Note: Sequence in lower case indicates low-complexity or repetitive sequence

  ---

SNP Assays
and
SNP Consensus

Strain alleles of submitted assays, and consensus values for this SNP

Assay ID	Submitter SNP ID	Submitter Handle	Population	ss orientation	Variation Type	129S1/SvImJ	A/J	AKR/J	BALB/cByJ	BTBR T<+> Itpr3/J	C3H/HeJ	C57BL/6J	DBA/2J	FVB/NJ	KK/HlJ	LG/J	MOLF/EiJ	NOD/ShiLtJ	NZW/LacJ	PWD/PhJ	SM/J	WSB/EiJ
ss37650915	NES09024015	PERLEGEN	MM_PANEL2	f	SNP	C	C	C	C	C	C		C	C	T		C	C	C	C		C
ss45253540	mCV24413908	ABI	CRAMUS_MOUSE	f	SNP		C					T	C
ss147326862	ENSMUSSNP2584711	ENSEMBL	ENSEMBL_Sanger	f	SNP								C
ss320474346	CHEV_2_119063930	CHEVERUD	SCREENING_POP	f	SNP											T					C
SNP Consensus Information
SNP					Consensus Type	129S1/SvImJ	A/J	AKR/J	BALB/cByJ	BTBR T<+> Itpr3/J	C3H/HeJ	C57BL/6J	DBA/2J	FVB/NJ	KK/HlJ	LG/J	MOLF/EiJ	NOD/ShiLtJ	NZW/LacJ	PWD/PhJ	SM/J	WSB/EiJ
rs13462799					SNP	C	C	C	C	C	C	T	C	C	T	T	C	C	C	C	C	C

Additional submitted assays for this SNP, where the strain of origin for observed alleles is not specified by the submitter

Assay ID	Submitter SNP ID	Submitter Handle	Population	ss orientation	Variation Type	Alleles
ss37650915	NES09024015	PERLEGEN	MM_PANEL	f	SNP	C/T

Gene/Marker
Associations
and
Function
Classes

MGI genes/markers associated with the SNP

Location: Chr2:119068675 () rs orientation: forward

Symbol	Name	Function Class
9130007G19Rik	RIKEN cDNA 9130007G19 gene	919 bp upstream
Cpgi12109	CpG island 12109	within coordinates
Rr563445	regulatory region 563445	930 bp distal
Rr563446	regulatory region 563446	1118 bp distal
Rr563447	regulatory region 563447	631 bp distal
Rr563448	regulatory region 563448	794 bp distal
Rr563449	regulatory region 563449	552 bp distal
Rr563450	regulatory region 563450	96 bp distal
Rr563451	regulatory region 563451	1198 bp proximal
Spint1	serine protease inhibitor, Kunitz type 1	Coding-Synonymous
Tssr19609	transcription start site region 19609	977 bp downstream
Tssr19610	transcription start site region 19610	820 bp downstream
Tssr19611	transcription start site region 19611	774 bp downstream
Tssr19612	transcription start site region 19612	720 bp downstream
Tssr19613	transcription start site region 19613	686 bp downstream
Tssr19614	transcription start site region 19614	670 bp downstream
Tssr19615	transcription start site region 19615	642 bp downstream
Tssr19616	transcription start site region 19616	549 bp downstream
Tssr19617	transcription start site region 19617	545 bp downstream
Tssr19618	transcription start site region 19618	484 bp downstream
Tssr19619	transcription start site region 19619	454 bp downstream