rs13462818 SNP Detail

Summary

• ID
  rs13462818
• Variation Type
  SNP
• Alleles
  C/T

• Created in dbSNP Build
  121
• Last Updated in dbSNP Build
  137
• Additional Resources
  JBrowse Genome Browser | Ensembl SNPView | UCSC Browser
  

Genome Location and Flanking Sequence

• Location
  Chr1:95241529 (GRCm39)
• SNP Orientation to the Genome
  forward

• SNP Reference Flanking Sequence

                                              GTCCGTAGCA GCAGTGGCTG
  CGGGGATGTA CGAACTTCCG GTTGTCCCGG CAGGCTGCTG CCGCCGCCGC CGCCGAAGCC
  ACCCGGCGCA GTCTCAGCCA CCCGCTCTCC TCCGGAGAGT CGGCTCTGCG GTTCCGGCGC
  GCCCATGGTC GGCGCTGCGG ACCGGGAGGC CGGCCCGGCG GCTGCGGCGT GCTGAGAGGC
  Y
  GGCGTGGAGA CCATGCCGAC CCCGCGCGGC TGCTCCGGGC CTTGCCACTT CCTGGCTCCG
  GCCTTCGTGT TGTTGTTGCT GCCCGCTCTG AGCGGGTCCG GGGCGGTACC GTCGATGGTG
  GTCAGGGAGG TGCAGGAGTC CAAGTCTCCC AAGCCCGGGC CGCACACGCT GTCGCCGCTT
  CCTCCGGGCC CCACCGCGGC                                            
  
  Y = C/T
  

  
  Note: Sequence in lower case indicates low-complexity or repetitive sequence

  ---

SNP Assays
and
SNP Consensus

Strain alleles of submitted assays, and consensus values for this SNP

Assay ID	Submitter SNP ID	Submitter Handle	Population	ss orientation	Variation Type	129P2/OlaHsd	129S1/SvImJ	129S5/SvEvBrd	A/J	AKR/J	B10.RIII-H2 H2-T18/(71NS)SnJ	BALB/cByJ	BALB/cJ	BTBR T<+> Itpr3/J	BUB/BnJ	C3H/HeH	C3H/HeJ	C57BL/6J	C57BL/6NJ	C57BL/10J	C57BL/10SnJ	C57BR/cdJ	C57L/J	C58/J	CAST/EiJ	CBA/J	CE/J	CZECHII/EiJ	DBA/1J	DBA/2J	FVB/NJ	I/LnJ	JF1/MsJ	KK/HlJ	LG/J	LP/J	MA/MyJ	MOLF/EiJ	NOD/ShiLtJ	NON/ShiLtJ	NZB/BlNJ	NZO/HlLtJ	NZW/LacJ	PL/J	PWK/PhJ	QSi3/Ianm	QSi5/Ianm	RF/J	RIIIS/J	SEA/GnJ	SJL/J	SM/J	SPRET/EiJ	ST/bJ	SWR/J	WSB/EiJ	ZALENDE/EiJ
ss350554882	MGP_WTSI_1_97210381	EVA_MGPV3	EVA_MGPV3	f	SNP	C	C	C	C	C	C	C	C	C	C	C	C	C	C	C	C	C	C	C	C	C	C	T	C	C	C	C	C	C	C	C	C	T	C	C	C	C	C	C	T	C	C	C	C	C	C	C	C	C	C	C	C
SNP Consensus Information
SNP					Consensus Type	129P2/OlaHsd	129S1/SvImJ	129S5/SvEvBrd	A/J	AKR/J	B10.RIII-H2 H2-T18/(71NS)SnJ	BALB/cByJ	BALB/cJ	BTBR T<+> Itpr3/J	BUB/BnJ	C3H/HeH	C3H/HeJ	C57BL/6J	C57BL/6NJ	C57BL/10J	C57BL/10SnJ	C57BR/cdJ	C57L/J	C58/J	CAST/EiJ	CBA/J	CE/J	CZECHII/EiJ	DBA/1J	DBA/2J	FVB/NJ	I/LnJ	JF1/MsJ	KK/HlJ	LG/J	LP/J	MA/MyJ	MOLF/EiJ	NOD/ShiLtJ	NON/ShiLtJ	NZB/BlNJ	NZO/HlLtJ	NZW/LacJ	PL/J	PWK/PhJ	QSi3/Ianm	QSi5/Ianm	RF/J	RIIIS/J	SEA/GnJ	SJL/J	SM/J	SPRET/EiJ	ST/bJ	SWR/J	WSB/EiJ	ZALENDE/EiJ
rs13462818					SNP	C	C	C	C	C	C	C	C	C	C	C	C	C	C	C	C	C	C	C	C	C	C	T	C	C	C	C	C	C	C	C	C	T	C	C	C	C	C	C	T	C	C	C	C	C	C	C	C	C	C	C	C

Additional submitted assays for this SNP, where the strain of origin for observed alleles is not specified by the submitter

Assay ID	Submitter SNP ID	Submitter Handle	Population	ss orientation	Variation Type	Alleles
ss350554882	MGP_WTSI_1_97210381	SC_MOUSE_GENOMES	SC_MOUSE_GENOMES	f	SNP	C/T

Gene/Marker
Associations
and
Function
Classes

MGI genes/markers associated with the SNP

Location: Chr1:95241529 () rs orientation: forward

Symbol	Name	Function Class
Cpgi614	CpG island 614	within coordinates
Fam174a	family with sequence similarity 174, member A	within coordinates
Rr29863	regulatory region 29863	within coordinates
Rr396183	regulatory region 396183	142 bp downstream
Tssr8214	transcription start site region 8214	127 bp downstream
Tssr8215	transcription start site region 8215	100 bp downstream
Tssr8216	transcription start site region 8216	283 bp upstream
Tssr8217	transcription start site region 8217	302 bp upstream
Tssr8218	transcription start site region 8218	320 bp upstream
Tssr8219	transcription start site region 8219	346 bp upstream
Tssr13058	transcription start site region 13058	251 bp downstream