rs13462859 SNP Detail

Summary

• ID
  rs13462859
• Variation Type
  SNP
• Alleles
  C/T

• Created in dbSNP Build
  121
• Last Updated in dbSNP Build
  142
• Additional Resources
  JBrowse Genome Browser | Ensembl SNPView | UCSC Browser | Alliance Variant
  

Genome Location and Flanking Sequence

• Location
  Chr11:96680060 (GRCm39)
• SNP Orientation to the Genome
  forward

• SNP Reference Flanking Sequence

                                        GCGGT ACGCCGCTTC AGCGGGACGG
  Y
  CGACTTGTGG CCACACGGCT CTTTG                                      
  
  Y = C/T
  

  
  Note: Sequence in lower case indicates low-complexity or repetitive sequence

  ---

SNP Assays
and
SNP Consensus

Strain alleles of submitted assays, and consensus values for this SNP

Assay ID	Submitter SNP ID	Submitter Handle	Population	ss orientation	Variation Type	129S1/SvImJ	129X1/SvJ	A/J	BTBR T<+> Itpr3/J	C3H/HeJ	CAST/EiJ	DBA/2J	FVB/NJ	KK/HlJ	LG/J	MOLF/EiJ	PWD/PhJ	SM/J
ss37293919	NES08562517	PERLEGEN	MM_PANEL2	f	SNP	T			T	T	T	T	T	T		T	C
ss132687343	ENSMUSSNP2061743	ENSEMBL	ENSEMBL_Sanger	f	SNP		T	C				T
ss323822801	CHEV_11_96650548	CHEVERUD	SCREENING_POP	f	SNP										C			T
SNP Consensus Information
SNP					Consensus Type	129S1/SvImJ	129X1/SvJ	A/J	BTBR T<+> Itpr3/J	C3H/HeJ	CAST/EiJ	DBA/2J	FVB/NJ	KK/HlJ	LG/J	MOLF/EiJ	PWD/PhJ	SM/J
rs13462859					SNP	T	T	C	T	T	T	T	T	T	C	T	C	T

Additional submitted assays for this SNP, where the strain of origin for observed alleles is not specified by the submitter

Assay ID	Submitter SNP ID	Submitter Handle	Population	ss orientation	Variation Type	Alleles
ss37293919	NES08562517	PERLEGEN	MM_PANEL	f	SNP	C/T

Gene/Marker
Associations
and
Function
Classes

MGI genes/markers associated with the SNP

Location: Chr11:96680060 () rs orientation: forward

Symbol	Name	Transcript	Protein	Function Class	Allele	Residue	Codon Position	AA Position
Cbx1	chromobox 1			mRNA-UTR
				Noncoding-Transcript-Variant
Cpgi3668	CpG island 3668			within coordinates
Rr455508	regulatory region 455508			within coordinates
Rr455509	regulatory region 455509			26 bp proximal
Rr455510	regulatory region 455510			1479 bp proximal
Tssr104569	transcription start site region 104569			88 bp downstream
Tssr104570	transcription start site region 104570			28 bp downstream
Tssr104571	transcription start site region 104571			10 bp downstream
Tssr104572	transcription start site region 104572			1 bp upstream
Tssr110346	transcription start site region 110346			226 bp upstream