rs13463022 SNP Detail

Summary

• ID
  rs13463022
• Variation Type
  SNP
• Alleles
  A/G

• Created in dbSNP Build
  121
• Last Updated in dbSNP Build
  142
• Additional Resources
  JBrowse Genome Browser | Ensembl SNPView | UCSC Browser
  

Genome Location and Flanking Sequence

• Location
  Chr9:75295054 (GRCm39)
• SNP Orientation to the Genome
  reverse

• SNP Reference Flanking Sequence

                                        TGCAG TGCAGGAGGA GACAAGATGC
  R
  CTAGGATGAT TAGACATTCT CATAG                                      
  
  R = A/G
  

  
  Note: Sequence in lower case indicates low-complexity or repetitive sequence

  ---

SNP Assays
and
SNP Consensus

Strain alleles of submitted assays, and consensus values for this SNP

Assay ID	Submitter SNP ID	Submitter Handle	Population	ss orientation	Variation Type	129S1/SvImJ	129X1/SvJ	A/J	AKR/J	BALB/cByJ	BTBR T<+> Itpr3/J	C3H/HeJ	CAST/EiJ	DBA/2J	FVB/NJ	KK/HlJ	LG/J	MOLF/EiJ	NOD/ShiLtJ	NZW/LacJ	PWD/PhJ	SM/J	WSB/EiJ
ss47737260	NES11306017	PERLEGEN	MM_PANEL2	r	SNP	C		T	T	T	C	T	C	T	T	T		C	T	C	C		C
ss136640757	ENSMUSSNP1538162	ENSEMBL	ENSEMBL_Sanger	r	SNP		C	T
ss323008200	CHEV_9_75235579	CHEVERUD	SCREENING_POP	r	SNP												C					T
SNP Consensus Information
SNP					Consensus Type	129S1/SvImJ	129X1/SvJ	A/J	AKR/J	BALB/cByJ	BTBR T<+> Itpr3/J	C3H/HeJ	CAST/EiJ	DBA/2J	FVB/NJ	KK/HlJ	LG/J	MOLF/EiJ	NOD/ShiLtJ	NZW/LacJ	PWD/PhJ	SM/J	WSB/EiJ
rs13463022					SNP	G	G	A	A	A	G	A	G	A	A	A	G	G	A	G	G	A	G

Additional submitted assays for this SNP, where the strain of origin for observed alleles is not specified by the submitter

Assay ID	Submitter SNP ID	Submitter Handle	Population	ss orientation	Variation Type	Alleles
ss47737260	NES11306017	PERLEGEN	MM_PANEL	r	SNP	C/T

Gene/Marker
Associations
and
Function
Classes

MGI genes/markers associated with the SNP

Location: Chr9:75295054 () rs orientation: reverse

Symbol	Name	Function Class
Gm67678	predicted gene, 67678	1982 bp downstream
Mapk6	mitogen-activated protein kinase 6	within coordinates
Tssr90534	transcription start site region 90534	525 bp upstream
Tssr90535	transcription start site region 90535	283 bp upstream
Tssr90536	transcription start site region 90536	115 bp downstream
Tssr90537	transcription start site region 90537	187 bp downstream
Tssr90538	transcription start site region 90538	218 bp downstream