rs13463059 SNP Detail

Summary

• ID
  rs13463059
• Variation Type
  SNP
• Alleles
  C/T

• Created in dbSNP Build
  121
• Last Updated in dbSNP Build
  142
• Additional Resources
  JBrowse Genome Browser | Ensembl SNPView | UCSC Browser
  

Genome Location and Flanking Sequence

• Location
  Chr3:88240263 (GRCm39)
• SNP Orientation to the Genome
  reverse

• SNP Reference Flanking Sequence

                                        CTTTC GATGCCCCGA GGCTGCCCAC
  Y
  ATGAGCTCCC GCTTGGTTTA CACCC                                      
  
  Y = C/T
  

  
  Note: Sequence in lower case indicates low-complexity or repetitive sequence

  ---

SNP Assays
and
SNP Consensus

Strain alleles of submitted assays, and consensus values for this SNP

Assay ID	Submitter SNP ID	Submitter Handle	Population	ss orientation	Variation Type	BALB/cByJ	CAST/EiJ	DBA/2J	PWD/PhJ
ss46742555	NES10756615	PERLEGEN	MM_PANEL2	r	SNP	G	G	G	A
SNP Consensus Information
SNP					Consensus Type	BALB/cByJ	CAST/EiJ	DBA/2J	PWD/PhJ
rs13463059					SNP	C	C	C	T

Additional submitted assays for this SNP, where the strain of origin for observed alleles is not specified by the submitter

Assay ID	Submitter SNP ID	Submitter Handle	Population	ss orientation	Variation Type	Alleles
ss46742555	NES10756615	PERLEGEN	MM_PANEL	r	SNP	A/G

Gene/Marker
Associations
and
Function
Classes

MGI genes/markers associated with the SNP

Location: Chr3:88240263 () rs orientation: reverse

Symbol	Name	Function Class
BC038331	cDNA sequence BC038331	1783 bp downstream
Cpgi13370	CpG island 13370	within coordinates
D3Mit175	DNA segment, Chr 3, Massachusetts Institute of Technology 175	1910 bp proximal
Gm65350	predicted gene, 65350	695 bp upstream
Rr579714	regulatory region 579714	1690 bp distal
Rr579715	regulatory region 579715	1376 bp distal
Rr579716	regulatory region 579716	1252 bp distal
Rr579717	regulatory region 579717	529 bp proximal
Rr579718	regulatory region 579718	706 bp proximal
Rr579719	regulatory region 579719	1302 bp proximal
Tmem79	transmembrane protein 79	within coordinates
Tssr34001	transcription start site region 34001	1472 bp downstream
Tssr34002	transcription start site region 34002	1526 bp downstream