rs13463391 SNP Detail

Summary

• ID
  rs13463391
• Variation Type
  SNP
• Alleles
  A/T

• Created in dbSNP Build
  121
• Last Updated in dbSNP Build
  137
• Additional Resources
  JBrowse Genome Browser | Ensembl SNPView | UCSC Browser
  

Genome Location and Flanking Sequence

• Location
  Chr7:12766599 (GRCm39)
• SNP Orientation to the Genome
  reverse

• SNP Reference Flanking Sequence

                                              TGACCTTAAG TATAACCTCA
  CAGCGTCATC CTTCTCTTGC CCACTCGGCA GGATGCTGTT CGAATCATGG CAAAAGACCT
  GGTGCGTACC CGGAGATATG TACGCAAGTT TGTGTTGATG CGGGCCAACA TCCAAGCTGT
  GTCCCTCAAG ATACAGACTC TAAAATCCAA CAACTCAATG GCACAAGCCA TGAAGGGTGT
  W
  ACTAAGGCCA TGGGCACTAT GAACAGACAG GTTTGTCCCT CCCAATCCAC TTTCCCATCC
  CCATTGACCT TCAAGCAGGT CACTTACCCT CCCTGCCTTC TTCCAGCTGA AATTACCCCA
  GATCCAGAAG ATCATGATGG AGTTTGAACG GCAGGCAGAG ATCATGGACA TGAAGGAAGA
  AATGATGAAT GACGCAATTG                                            
  
  W = A/T
  

  
  Note: Sequence in lower case indicates low-complexity or repetitive sequence

  ---

SNP Assays
and
SNP Consensus

Strain alleles of submitted assays, and consensus values for this SNP

Assay ID	Submitter SNP ID	Submitter Handle	Population	ss orientation	Variation Type	LG/J	SM/J
ss322107205	CHEV_7_13618021	CHEVERUD	SCREENING_POP	r	SNP	T	A
SNP Consensus Information
SNP					Consensus Type	LG/J	SM/J
rs13463391					SNP	A	T

Gene/Marker
Associations
and
Function
Classes

MGI genes/markers associated with the SNP

Location: Chr7:12766599 () rs orientation: reverse

Symbol	Name	Function Class
Chmp2a	charged multivesicular body protein 2A	within coordinates
Cpgi18334	CpG island 18334	1569 bp proximal
Rr368233	regulatory region 368233	1971 bp upstream
Trim28	tripartite motif-containing 28	1640 bp downstream
Tssr64533	transcription start site region 64533	1706 bp downstream
Tssr70642	transcription start site region 70642	1280 bp downstream
Tssr70643	transcription start site region 70643	1347 bp downstream
Tssr70644	transcription start site region 70644	1451 bp downstream
Tssr70645	transcription start site region 70645	1729 bp downstream
Tssr70646	transcription start site region 70646	1932 bp downstream