rs13463538 SNP Detail

Summary

• ID
  rs13463538
• Variation Type
  SNP
• Alleles
  C/G

• Created in dbSNP Build
  121
• Last Updated in dbSNP Build
  138
• Additional Resources
  JBrowse Genome Browser | Ensembl SNPView | UCSC Browser
  

Genome Location and Flanking Sequence

• Location
  Chr5:115049423 (GRCm39)
• SNP Orientation to the Genome
  forward

• SNP Reference Flanking Sequence

                                        CACCA TCATACTCAT TAGGGTAATC
  S
  ACTAGTCTGG CTGCTTGAGT CCGTG                                      
  
  S = C/G
  

  
  Note: Sequence in lower case indicates low-complexity or repetitive sequence

  ---

SNP Assays
and
SNP Consensus

Strain alleles of submitted assays, and consensus values for this SNP

Assay ID	Submitter SNP ID	Submitter Handle	Population	ss orientation	Variation Type	129X1/SvJ	A/J	LG/J	SM/J
ss149118821	ENSMUSSNP133266	ENSEMBL	ENSEMBL_Sanger	f	SNP	G	C
ss321653761	CHEV_5_115361371	CHEVERUD	SCREENING_POP	f	SNP			G	C
SNP Consensus Information
SNP					Consensus Type	129X1/SvJ	A/J	LG/J	SM/J
rs13463538					SNP	G	C	G	C

Gene/Marker
Associations
and
Function
Classes

MGI genes/markers associated with the SNP

Location: Chr5:115049423 () rs orientation: forward

Symbol	Name	Function Class
Oasl2	2'-5' oligoadenylate synthetase-like 2	within coordinates
Rr618060	regulatory region 618060	868 bp distal
Tssr48138	transcription start site region 48138	1453 bp downstream
Tssr48139	transcription start site region 48139	340 bp downstream
Tssr48140	transcription start site region 48140	306 bp downstream
Tssr48141	transcription start site region 48141	89 bp downstream
Tssr48142	transcription start site region 48142	within coordinates
Tssr48143	transcription start site region 48143	20 bp upstream
Tssr48144	transcription start site region 48144	73 bp upstream
Tssr48145	transcription start site region 48145	129 bp upstream
Tssr48146	transcription start site region 48146	178 bp upstream
Tssr48147	transcription start site region 48147	220 bp upstream
Tssr48148	transcription start site region 48148	282 bp upstream
Tssr48149	transcription start site region 48149	309 bp upstream
Tssr48150	transcription start site region 48150	320 bp upstream
Tssr48151	transcription start site region 48151	338 bp upstream
Tssr48152	transcription start site region 48152	420 bp upstream
Tssr48153	transcription start site region 48153	510 bp upstream
Tssr48154	transcription start site region 48154	522 bp upstream
Tssr52739	transcription start site region 52739	359 bp upstream