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rs13463654 SNP Detail
Summary
  • ID
    rs13463654
  • Variation Type
    SNP
  • Alleles
    G/T
Genome Location and Flanking Sequence
  • Location
    Chr7:19430752 (GRCm39)
  • SNP Orientation to the Genome
    reverse
  • SNP Reference Flanking Sequence
                                          GCAAG CGCTTGATGC GGGATGCCGA
K
GATCTGCAGA AGCGCCTAGC TGTGT                                      

K = G/T

    Note: Sequence in lower case indicates low-complexity or repetitive sequence
    BLAST SNP flanking sequence against the mouse Genome
SNP Assays
and
SNP Consensus
Strain alleles of submitted assays, and consensus values for this SNP
Legend
Assay ID Submitter
SNP ID		 Submitter
Handle		 Population
ss orientation
 Variation Type
129S1/SvImJ
A/J
AKR/J
BALB/cByJ
BTBR T<+> Itpr3/J
C3H/HeJ
CAST/EiJ
DBA/2J
FVB/NJ
LG/J
MOLF/EiJ
NOD/ShiLtJ
NZW/LacJ
PWD/PhJ
SM/J
ss48163972 NES11834427 PERLEGEN MM_PANEL2 r SNP C C A C C C C A A C C C C
ss322117527 CHEV_7_20282176 CHEVERUD SCREENING_POP r SNP C A
SNP Consensus Information
SNP Consensus Type
129S1/SvImJ
A/J
AKR/J
BALB/cByJ
BTBR T<+> Itpr3/J
C3H/HeJ
CAST/EiJ
DBA/2J
FVB/NJ
LG/J
MOLF/EiJ
NOD/ShiLtJ
NZW/LacJ
PWD/PhJ
SM/J
rs13463654 SNP G G T G G G G T T G G G G G T
Additional submitted assays for this SNP, where the strain of origin for observed alleles is not specified by the submitter
Assay ID Submitter
SNP ID		 Submitter
Handle		 Population
ss orientation
 Variation
Type		 Alleles
ss48163972 NES11834427 PERLEGEN MM_PANEL r SNP A/C
Gene/Marker
Associations
and
Function
Classes
MGI genes/markers associated with the SNP
Location: Chr7:19430752 () rs orientation: reverse
Symbol Name Transcript Protein Function
Class		 Allele Residue Codon
Position		 AA
Position
Apoe apolipoprotein E within coordinates
Cpgi18507 CpG island 18507 within coordinates
Cpgi18508 CpG island 18508 1572 bp proximal
D7Mit57 DNA segment, Chr 7, Massachusetts Institute of Technology 57 944 bp proximal
Gm71725 predicted gene, 71725 291 bp upstream
Rr643239 regulatory region 643239 1291 bp distal
Rr643240 regulatory region 643240 355 bp distal
Rr643241 regulatory region 643241 within coordinates
Rr643242 regulatory region 643242 1430 bp proximal
Rr643243 regulatory region 643243 1448 bp proximal
Tssr2112 transcription start site region 2112 366 bp downstream
Tssr2113 transcription start site region 2113 336 bp downstream
Tssr2114 transcription start site region 2114 210 bp downstream
Tssr2115 transcription start site region 2115 182 bp downstream
Tssr2116 transcription start site region 2116 112 bp downstream
Tssr2117 transcription start site region 2117 58 bp downstream
Tssr2118 transcription start site region 2118 4 bp upstream
Tssr2119 transcription start site region 2119 13 bp downstream
Tssr2120 transcription start site region 2120 76 bp upstream
Tssr2121 transcription start site region 2121 108 bp upstream
Tssr2122 transcription start site region 2122 828 bp downstream
Tssr64880 transcription start site region 64880 553 bp downstream
Tssr64881 transcription start site region 64881 490 bp downstream
Tssr64882 transcription start site region 64882 431 bp downstream
Tssr64883 transcription start site region 64883 414 bp downstream
Tssr64884 transcription start site region 64884 386 bp downstream
Tssr64885 transcription start site region 64885 308 bp downstream
Tssr64886 transcription start site region 64886 273 bp downstream
Tssr64887 transcription start site region 64887 255 bp downstream
Tssr64888 transcription start site region 64888 37 bp downstream
Tssr64889 transcription start site region 64889 47 bp upstream
Tssr64890 transcription start site region 64890 93 bp upstream
Tssr64891 transcription start site region 64891 116 bp upstream
Tssr64892 transcription start site region 64892 149 bp upstream
Tssr64893 transcription start site region 64893 184 bp upstream
Tssr64894 transcription start site region 64894 638 bp upstream
Tssr64895 transcription start site region 64895 734 bp upstream
Tssr64896 transcription start site region 64896 760 bp upstream
Tssr70973 transcription start site region 70973 498 bp upstream
Tssr70974 transcription start site region 70974 465 bp upstream
Tssr70975 transcription start site region 70975 440 bp upstream
Tssr70976 transcription start site region 70976 388 bp upstream
Tssr70977 transcription start site region 70977 367 bp upstream
Tssr70978 transcription start site region 70978 344 bp upstream
Tssr70979 transcription start site region 70979 336 bp upstream
Tssr70980 transcription start site region 70980 322 bp upstream
Tssr70981 transcription start site region 70981 298 bp upstream
Tssr70982 transcription start site region 70982 269 bp upstream
Tssr70983 transcription start site region 70983 248 bp upstream
Tssr70984 transcription start site region 70984 188 bp upstream
Tssr70985 transcription start site region 70985 153 bp upstream
Tssr70986 transcription start site region 70986 124 bp upstream
Tssr70987 transcription start site region 70987 79 bp upstream
Tssr70988 transcription start site region 70988 60 bp upstream
Tssr70989 transcription start site region 70989 22 bp upstream
Tssr70990 transcription start site region 70990 3 bp upstream
Tssr70991 transcription start site region 70991 24 bp downstream
Tssr70992 transcription start site region 70992 32 bp downstream
Tssr70993 transcription start site region 70993 41 bp downstream
Tssr70994 transcription start site region 70994 82 bp downstream
Tssr70995 transcription start site region 70995 87 bp downstream
Tssr70996 transcription start site region 70996 120 bp downstream
Tssr70997 transcription start site region 70997 154 bp downstream
Tssr70998 transcription start site region 70998 216 bp downstream
Tssr70999 transcription start site region 70999 234 bp downstream
Tssr71000 transcription start site region 71000 677 bp downstream
Tssr71001 transcription start site region 71001 707 bp downstream
Tssr71002 transcription start site region 71002 767 bp downstream
Tssr71003 transcription start site region 71003 785 bp downstream
Tssr71004 transcription start site region 71004 813 bp downstream
Tssr71005 transcription start site region 71005 1164 bp downstream
Tssr71006 transcription start site region 71006 1197 bp downstream
Tssr71007 transcription start site region 71007 1255 bp downstream
Tssr71008 transcription start site region 71008 1361 bp downstream
Tssr71009 transcription start site region 71009 1379 bp downstream
Tssr71010 transcription start site region 71010 1523 bp downstream
Tssr71011 transcription start site region 71011 1556 bp downstream
Tssr71012 transcription start site region 71012 1592 bp downstream
Contributing Projects:
Mouse Genome Database (MGD), Gene Expression Database (GXD), Mouse Models of Human Cancer database (MMHCdb) (formerly Mouse Tumor Biology (MTB)), Gene Ontology (GO)
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Send questions and comments to User Support. 		last database update
12/17/2024
MGI 6.24 		The Jackson Laboratory