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rs13463662 SNP Detail
Summary
  • ID
    rs13463662
  • Variation Type
    SNP
  • Alleles
    C/T
Genome Location and Flanking Sequence
  • Location
    Chr7:19430962 (GRCm39)
  • SNP Orientation to the Genome
    reverse
  • SNP Reference Flanking Sequence
                                          AAAAG GAGCTGGAGG AACAGCTGGG
Y
CCAGTGGCGG AGGAGACACG GGCCA                                      

Y = C/T

    Note: Sequence in lower case indicates low-complexity or repetitive sequence
    BLAST SNP flanking sequence against the mouse Genome
SNP Assays
and
SNP Consensus
Strain alleles of submitted assays, and consensus values for this SNP
Legend
Assay ID Submitter
SNP ID		 Submitter
Handle		 Population
ss orientation
 Variation Type
129P2/OlaHsd
129S1/SvImJ
129S5/SvEvBrd
A/J
AKR/J
B10.RIII-H2 H2-T18/(71NS)SnJ
BALB/cByJ
BALB/cJ
BTBR T<+> Itpr3/J
BUB/BnJ
C3H/HeH
C3H/HeJ
C57BL/6J
C57BL/6NJ
C57BL/10J
C57BL/10SnJ
C57BR/cdJ
C57L/J
C58/J
CAST/EiJ
CBA/J
CE/J
CZECHII/EiJ
DBA/1J
DBA/2J
FVB/NJ
I/LnJ
JF1/MsJ
KK/HlJ
LEWES/EiJ
LP/J
MA/MyJ
MOLF/EiJ
NOD/ShiLtJ
NON/ShiLtJ
NZB/BlNJ
NZO/HlLtJ
NZW/LacJ
PL/J
PWK/PhJ
QSi3/Ianm
QSi5/Ianm
RF/J
RIIIS/J
SEA/GnJ
SJL/J
SPRET/EiJ
ST/bJ
SWR/J
WSB/EiJ
ZALENDE/EiJ
ss918579999 MGP_WTSI_7_19697037 EVA_MGPV3 EVA_MGPV3 r SNP A A A A A A A A A A A A A A A A A A A A A A A A A A A A A A A A A A A A A A A A A A A A A A G A A A A
SNP Consensus Information
SNP Consensus Type
129P2/OlaHsd
129S1/SvImJ
129S5/SvEvBrd
A/J
AKR/J
B10.RIII-H2 H2-T18/(71NS)SnJ
BALB/cByJ
BALB/cJ
BTBR T<+> Itpr3/J
BUB/BnJ
C3H/HeH
C3H/HeJ
C57BL/6J
C57BL/6NJ
C57BL/10J
C57BL/10SnJ
C57BR/cdJ
C57L/J
C58/J
CAST/EiJ
CBA/J
CE/J
CZECHII/EiJ
DBA/1J
DBA/2J
FVB/NJ
I/LnJ
JF1/MsJ
KK/HlJ
LEWES/EiJ
LP/J
MA/MyJ
MOLF/EiJ
NOD/ShiLtJ
NON/ShiLtJ
NZB/BlNJ
NZO/HlLtJ
NZW/LacJ
PL/J
PWK/PhJ
QSi3/Ianm
QSi5/Ianm
RF/J
RIIIS/J
SEA/GnJ
SJL/J
SPRET/EiJ
ST/bJ
SWR/J
WSB/EiJ
ZALENDE/EiJ
rs13463662 SNP T T T T T T T T T T T T T T T T T T T T T T T T T T T T T T T T T T T T T T T T T T T T T T C T T T T
Additional submitted assays for this SNP, where the strain of origin for observed alleles is not specified by the submitter
Assay ID Submitter
SNP ID		 Submitter
Handle		 Population
ss orientation
 Variation
Type		 Alleles
ss918579999 MGP_WTSI_7_19697037 SC_MOUSE_GENOMES SC_MOUSE_GENOMES r SNP A/G
Gene/Marker
Associations
and
Function
Classes
MGI genes/markers associated with the SNP
Location: Chr7:19430962 () rs orientation: reverse
Symbol Name Transcript Protein Function
Class		 Allele Residue Codon
Position		 AA
Position
Apoe apolipoprotein E within coordinates
Cpgi18507 CpG island 18507 within coordinates
Cpgi18508 CpG island 18508 1362 bp proximal
D7Mit57 DNA segment, Chr 7, Massachusetts Institute of Technology 57 734 bp proximal
Gm71725 predicted gene, 71725 81 bp upstream
Rr155346 regulatory region 155346 362 bp distal
Rr167194 regulatory region 167194 within coordinates
Tssr2112 transcription start site region 2112 576 bp downstream
Tssr2113 transcription start site region 2113 546 bp downstream
Tssr2114 transcription start site region 2114 420 bp downstream
Tssr2115 transcription start site region 2115 392 bp downstream
Tssr2116 transcription start site region 2116 322 bp downstream
Tssr2117 transcription start site region 2117 268 bp downstream
Tssr2118 transcription start site region 2118 173 bp downstream
Tssr2119 transcription start site region 2119 196 bp upstream
Tssr2120 transcription start site region 2120 123 bp downstream
Tssr2121 transcription start site region 2121 97 bp downstream
Tssr2122 transcription start site region 2122 618 bp downstream
Tssr64880 transcription start site region 64880 763 bp downstream
Tssr64881 transcription start site region 64881 700 bp downstream
Tssr64882 transcription start site region 64882 641 bp downstream
Tssr64883 transcription start site region 64883 624 bp downstream
Tssr64884 transcription start site region 64884 596 bp downstream
Tssr64885 transcription start site region 64885 518 bp downstream
Tssr64886 transcription start site region 64886 483 bp downstream
Tssr64887 transcription start site region 64887 465 bp downstream
Tssr64888 transcription start site region 64888 247 bp downstream
Tssr64889 transcription start site region 64889 140 bp downstream
Tssr64890 transcription start site region 64890 106 bp downstream
Tssr64891 transcription start site region 64891 78 bp downstream
Tssr64892 transcription start site region 64892 47 bp downstream
Tssr64893 transcription start site region 64893 within coordinates
Tssr64894 transcription start site region 64894 428 bp upstream
Tssr64895 transcription start site region 64895 524 bp upstream
Tssr64896 transcription start site region 64896 550 bp upstream
Tssr70973 transcription start site region 70973 708 bp upstream
Tssr70974 transcription start site region 70974 675 bp upstream
Tssr70975 transcription start site region 70975 650 bp upstream
Tssr70976 transcription start site region 70976 598 bp upstream
Tssr70977 transcription start site region 70977 577 bp upstream
Tssr70978 transcription start site region 70978 554 bp upstream
Tssr70979 transcription start site region 70979 546 bp upstream
Tssr70980 transcription start site region 70980 532 bp upstream
Tssr70981 transcription start site region 70981 508 bp upstream
Tssr70982 transcription start site region 70982 479 bp upstream
Tssr70983 transcription start site region 70983 458 bp upstream
Tssr70984 transcription start site region 70984 398 bp upstream
Tssr70985 transcription start site region 70985 363 bp upstream
Tssr70986 transcription start site region 70986 334 bp upstream
Tssr70987 transcription start site region 70987 289 bp upstream
Tssr70988 transcription start site region 70988 270 bp upstream
Tssr70989 transcription start site region 70989 232 bp upstream
Tssr70990 transcription start site region 70990 213 bp upstream
Tssr70991 transcription start site region 70991 183 bp upstream
Tssr70992 transcription start site region 70992 171 bp upstream
Tssr70993 transcription start site region 70993 142 bp upstream
Tssr70994 transcription start site region 70994 127 bp upstream
Tssr70995 transcription start site region 70995 94 bp upstream
Tssr70996 transcription start site region 70996 68 bp upstream
Tssr70997 transcription start site region 70997 2 bp upstream
Tssr70998 transcription start site region 70998 6 bp downstream
Tssr70999 transcription start site region 70999 24 bp downstream
Tssr71000 transcription start site region 71000 467 bp downstream
Tssr71001 transcription start site region 71001 497 bp downstream
Tssr71002 transcription start site region 71002 557 bp downstream
Tssr71003 transcription start site region 71003 575 bp downstream
Tssr71004 transcription start site region 71004 603 bp downstream
Tssr71005 transcription start site region 71005 954 bp downstream
Tssr71006 transcription start site region 71006 987 bp downstream
Tssr71007 transcription start site region 71007 1045 bp downstream
Tssr71008 transcription start site region 71008 1151 bp downstream
Tssr71009 transcription start site region 71009 1169 bp downstream
Tssr71010 transcription start site region 71010 1313 bp downstream
Tssr71011 transcription start site region 71011 1346 bp downstream
Tssr71012 transcription start site region 71012 1382 bp downstream
Contributing Projects:
Mouse Genome Database (MGD), Gene Expression Database (GXD), Mouse Models of Human Cancer database (MMHCdb) (formerly Mouse Tumor Biology (MTB)), Gene Ontology (GO)
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Send questions and comments to User Support. 		last database update
12/17/2024
MGI 6.24 		The Jackson Laboratory