rs13463770 SNP Detail

Summary

• ID
  rs13463770
• Variation Type
  SNP
• Alleles
  C/T

• Created in dbSNP Build
  121
• Last Updated in dbSNP Build
  142
• Additional Resources
  JBrowse Genome Browser | Ensembl SNPView | UCSC Browser
  

Genome Location and Flanking Sequence

• Location
  Chr8:85704567 (GRCm39)
• SNP Orientation to the Genome
  reverse

• SNP Reference Flanking Sequence

                                        TGGGC GCCAGCGGGG GTCCCCAGGC
  Y
  GGCCCAGGGG GCGTCTATGC TGGTC                                      
  
  Y = C/T
  

  
  Note: Sequence in lower case indicates low-complexity or repetitive sequence

  ---

SNP Assays
and
SNP Consensus

Strain alleles of submitted assays, and consensus values for this SNP

Assay ID	Submitter SNP ID	Submitter Handle	Population	ss orientation	Variation Type	A/J	DBA/2J	LG/J	SM/J
ss145398666	ENSMUSSNP5530981	ENSEMBL	ENSEMBL_Sanger	r	SNP	A	A
ss322752772	CHEV_8_87501837	CHEVERUD	SCREENING_POP	r	SNP			G	A
SNP Consensus Information
SNP					Consensus Type	A/J	DBA/2J	LG/J	SM/J
rs13463770					SNP	T	T	C	T

Gene/Marker
Associations
and
Function
Classes

MGI genes/markers associated with the SNP

Location: Chr8:85704567 () rs orientation: reverse

Symbol	Name	Function Class
Cpgi20738	CpG island 20738	within coordinates
Cpgi20739	CpG island 20739	1866 bp proximal
Junb	jun B proto-oncogene	within coordinates
Rr187033	regulatory region 187033	within coordinates
Rr382406	regulatory region 382406	within coordinates
Rr401033	regulatory region 401033	720 bp upstream
Rr401034	regulatory region 401034	1940 bp upstream
Tssr78490	transcription start site region 78490	1196 bp downstream
Tssr78491	transcription start site region 78491	1181 bp downstream
Tssr78492	transcription start site region 78492	140 bp downstream
Tssr78493	transcription start site region 78493	31 bp downstream
Tssr78494	transcription start site region 78494	78 bp upstream
Tssr78495	transcription start site region 78495	229 bp upstream
Tssr78496	transcription start site region 78496	645 bp upstream
Tssr78497	transcription start site region 78497	675 bp upstream
Tssr78498	transcription start site region 78498	1034 bp upstream
Tssr82215	transcription start site region 82215	1601 bp upstream
Tssr82216	transcription start site region 82216	388 bp upstream
Tssr82217	transcription start site region 82217	50 bp upstream
Tssr82218	transcription start site region 82218	55 bp downstream
Tssr82219	transcription start site region 82219	72 bp downstream
Tssr82220	transcription start site region 82220	130 bp downstream
Tssr82221	transcription start site region 82221	163 bp downstream
Tssr82222	transcription start site region 82222	184 bp downstream
Tssr82223	transcription start site region 82223	513 bp downstream
Tssr82224	transcription start site region 82224	586 bp downstream
Tssr82225	transcription start site region 82225	771 bp downstream