rs13463771 SNP Detail

Summary

• ID
  rs13463771
• Variation Type
  SNP
• Alleles
  T

• Created in dbSNP Build
  121
• Last Updated in dbSNP Build
  142
• Additional Resources
  JBrowse Genome Browser | Ensembl SNPView | UCSC Browser
  

Genome Location and Flanking Sequence

• Location
  Chr8:85704501 (GRCm39)
• SNP Orientation to the Genome
  reverse

• SNP Reference Flanking Sequence

                                        TCTAC ACCAACCTCA GCAGTTACTC
  T
  CCAGCCTCTG CACCCTCTGG AGGCT                                      
  
  T = T
  

  
  Note: Sequence in lower case indicates low-complexity or repetitive sequence

  ---

SNP Assays
and
SNP Consensus

Strain alleles of submitted assays, and consensus values for this SNP

Assay ID	Submitter SNP ID	Submitter Handle	Population	ss orientation	Variation Type	129X1/SvJ	A/J	DBA/2J	LG/J	SM/J
ss145398660	ENSMUSSNP2421106	ENSEMBL	ENSEMBL_Sanger	r	SNP	A	A	A
ss322752771	CHEV_8_87501771	CHEVERUD	SCREENING_POP	r	SNP				A	A
SNP Consensus Information
SNP					Consensus Type	129X1/SvJ	A/J	DBA/2J	LG/J	SM/J
rs13463771					SNP	T	T	T	T	T

Gene/Marker
Associations
and
Function
Classes

MGI genes/markers associated with the SNP

Location: Chr8:85704501 () rs orientation: reverse

Symbol	Name	Function Class
Cpgi20738	CpG island 20738	within coordinates
Cpgi20739	CpG island 20739	1932 bp proximal
Junb	jun B proto-oncogene	within coordinates
Rr187033	regulatory region 187033	within coordinates
Rr382406	regulatory region 382406	within coordinates
Rr401033	regulatory region 401033	786 bp upstream
Tssr78490	transcription start site region 78490	1130 bp downstream
Tssr78491	transcription start site region 78491	1115 bp downstream
Tssr78492	transcription start site region 78492	74 bp downstream
Tssr78493	transcription start site region 78493	within coordinates
Tssr78494	transcription start site region 78494	144 bp upstream
Tssr78495	transcription start site region 78495	295 bp upstream
Tssr78496	transcription start site region 78496	711 bp upstream
Tssr78497	transcription start site region 78497	741 bp upstream
Tssr78498	transcription start site region 78498	1100 bp upstream
Tssr82215	transcription start site region 82215	1535 bp upstream
Tssr82216	transcription start site region 82216	322 bp upstream
Tssr82217	transcription start site region 82217	2 bp downstream
Tssr82218	transcription start site region 82218	121 bp downstream
Tssr82219	transcription start site region 82219	138 bp downstream
Tssr82220	transcription start site region 82220	196 bp downstream
Tssr82221	transcription start site region 82221	229 bp downstream
Tssr82222	transcription start site region 82222	250 bp downstream
Tssr82223	transcription start site region 82223	579 bp downstream
Tssr82224	transcription start site region 82224	652 bp downstream
Tssr82225	transcription start site region 82225	837 bp downstream