rs13463964 SNP Detail

Summary

• ID
  rs13463964
• Variation Type
  SNP
• Alleles
  A/G

• Created in dbSNP Build
  121
• Last Updated in dbSNP Build
  137
• Additional Resources
  JBrowse Genome Browser | Ensembl SNPView | UCSC Browser
  

Genome Location and Flanking Sequence

• Location
  Chr18:77867555 (GRCm39)
• SNP Orientation to the Genome
  forward

• SNP Reference Flanking Sequence

             GACTGTAACT TTTTCTCCTC AGATGCCATG AAGTACACCA TCGTGGTGTC
  R
  GCCACTGCCT CTGACGCTGC CCCGCTTCAG TACTTGGCTC CCTACTCCGG           
  
  R = A/G
  

  
  Note: Sequence in lower case indicates low-complexity or repetitive sequence

  ---

SNP Assays
and
SNP Consensus

Strain alleles of submitted assays, and consensus values for this SNP

Assay ID	Submitter SNP ID	Submitter Handle	Population	ss orientation	Variation Type	129X1/SvJ	A/J	C57BL/6J	DBA/2J
ss39667052	mCV22975768	ABI	CRAMUS_MOUSE	f	SNP	G	A	A	A
ss147555408	ENSMUSSNP4535471	ENSEMBL	ENSEMBL_Sanger	f	SNP	G	A		A
SNP Consensus Information
SNP					Consensus Type	129X1/SvJ	A/J	C57BL/6J	DBA/2J
rs13463964					SNP	G	A	A	A

Gene/Marker
Associations
and
Function
Classes

MGI genes/markers associated with the SNP

Location: Chr18:77867555 () rs orientation: forward

Symbol	Name	Function Class
Atp5f1a	ATP synthase F1 subunit alpha	within coordinates
Tssr152043	transcription start site region 152043	1244 bp downstream
Tssr152044	transcription start site region 152044	1058 bp downstream
Tssr152045	transcription start site region 152045	within coordinates
Tssr152046	transcription start site region 152046	215 bp upstream
Tssr152047	transcription start site region 152047	1984 bp upstream
Tssr153960	transcription start site region 153960	1283 bp upstream