rs13464190 SNP Detail

Summary

• ID
  rs13464190
• Variation Type
  SNP
• Alleles
  C/T

• Created in dbSNP Build
  121
• Last Updated in dbSNP Build
  142
• Additional Resources
  JBrowse Genome Browser | Ensembl SNPView | UCSC Browser
  

Genome Location and Flanking Sequence

• Location
  Chr2:121304411 (GRCm39)
• SNP Orientation to the Genome
  reverse

• SNP Reference Flanking Sequence

                                        GGGAT TGAGTCCGTT TTGGAGAGTC
  Y
  CCGCGGCAGC CGTCACCATG TCGGT                                      
  
  Y = C/T
  

  
  Note: Sequence in lower case indicates low-complexity or repetitive sequence

  ---

SNP Assays
and
SNP Consensus

Strain alleles of submitted assays, and consensus values for this SNP

Assay ID	Submitter SNP ID	Submitter Handle	Population	ss orientation	Variation Type	129X1/SvJ	A/J	DBA/2J	LG/J	SM/J
ss147387247	ENSMUSSNP2580677	ENSEMBL	ENSEMBL_Sanger	r	SNP	G	G	G
ss320483277	CHEV_2_121299666	CHEVERUD	SCREENING_POP	r	SNP				A	G
SNP Consensus Information
SNP					Consensus Type	129X1/SvJ	A/J	DBA/2J	LG/J	SM/J
rs13464190					SNP	C	C	C	T	C

Gene/Marker
Associations
and
Function
Classes

MGI genes/markers associated with the SNP

Location: Chr2:121304411 () rs orientation: reverse

Symbol	Name	Function Class
Cpgi12161	CpG island 12161	23 bp proximal
Gm75774	predicted gene, 75774	159 bp upstream
Mfap1b	microfibrillar-associated protein 1B	within coordinates
Rr563831	regulatory region 563831	845 bp distal
Rr563832	regulatory region 563832	717 bp distal
Rr563833	regulatory region 563833	127 bp proximal
Rr563834	regulatory region 563834	170 bp proximal
Tssr25938	transcription start site region 25938	63 bp downstream
Tssr25939	transcription start site region 25939	111 bp downstream