rs13464645 SNP Detail

Summary

• ID
  rs13464645
• Variation Type
  SNP
• Alleles
  C/T

• Created in dbSNP Build
  121
• Last Updated in dbSNP Build
  137
• Additional Resources
  JBrowse Genome Browser | Ensembl SNPView | UCSC Browser | Alliance Variant
  

Genome Location and Flanking Sequence

• Location
  Chr2:30303141 (GRCm39)
• SNP Orientation to the Genome
  reverse

• SNP Reference Flanking Sequence

             GTGAGCCCAT TCTTCCTCAC TCACGATGGG CTGCAGTGCC TTGAGGTAAT
  Y
  GTCCAGGGAT TGCTGAAGTG GGGGCACAGG CAGCCTTGGC AGTGCATCTT           
  
  Y = C/T
  

  
  Note: Sequence in lower case indicates low-complexity or repetitive sequence

  ---

SNP Assays
and
SNP Consensus

Strain alleles of submitted assays, and consensus values for this SNP

Assay ID	Submitter SNP ID	Submitter Handle	Population	ss orientation	Variation Type	129X1/SvJ	A/J	C57BL/6J	DBA/2J
ss45226103	mCV23383214	ABI	CRAMUS_MOUSE	r	SNP	G	A	A	A
ss146398612	ENSMUSSNP3315572	ENSEMBL	ENSEMBL_Sanger	r	SNP	G	A		A
SNP Consensus Information
SNP					Consensus Type	129X1/SvJ	A/J	C57BL/6J	DBA/2J
rs13464645					SNP	C	T	T	T

Gene/Marker
Associations
and
Function
Classes

MGI genes/markers associated with the SNP

Location: Chr2:30303141 () rs orientation: reverse

Symbol	Name	Transcript	Protein	Function Class	Allele	Residue	Codon Position	AA Position
Cpgi11436	CpG island 11436			1962 bp proximal
Crat	carnitine acetyltransferase			Coding-NonSynonymous
				mRNA-UTR
				mRNA-UTR
				Noncoding-Transcript-Variant
Gm16323	predicted gene 16323			587 bp upstream
Rr554310	regulatory region 554310			497 bp proximal
Rr554311	regulatory region 554311			598 bp proximal
Rr554312	regulatory region 554312			1555 bp proximal
Tssr23368	transcription start site region 23368			141 bp downstream
Tssr23369	transcription start site region 23369			975 bp downstream
Tssr23370	transcription start site region 23370			1040 bp downstream