rs13464995 SNP Detail

Summary

• ID
  rs13464995
• Variation Type
  SNP
• Alleles
  C/T

• Created in dbSNP Build
  121
• Last Updated in dbSNP Build
  137
• Additional Resources
  JBrowse Genome Browser | Ensembl SNPView | UCSC Browser
  

Genome Location and Flanking Sequence

• Location
  Chr15:59523546 (GRCm39)
• SNP Orientation to the Genome
  forward

• SNP Reference Flanking Sequence

                                              TACCAGGACA AAATCAGGCC
  TTACATCCAG CTGCCGTCCC ATAGCAACAT CACTGGCATT GTGGAGGTGC TCCTTGGTGA
  GAGCAAGGCC TACGTCTTCT TCGAGAAGGA CTTTGGAGAC ATGCACTCCT ATGTGCGGAG
  CCGAAAACGG CTTCGGGAAG AGGAGGCCGC TCGGCTCTTC AAGCAGATTG TTTCCGCCGT
  Y
  GCCCACTGCC ACCAGTCGGC CATCGTGCTG GGGGACCTGA AGCTCAGGAA GTTCGTCTTC
  TCCACCGAGG AGAGGTAGGC AGCTGACACA GCACTTCTGG TGGCCTTTTG GAACAACAGC
  AGCAACAATC CCCACCCCCC CAAACAATGA AACAAACAAA CAAAATGAAA CAAAACCCCC
  AAAGGCACAG GTCATGCCTT                                            
  
  Y = C/T
  

  
  Note: Sequence in lower case indicates low-complexity or repetitive sequence

  ---

SNP Assays
and
SNP Consensus

Strain alleles of submitted assays, and consensus values for this SNP

Assay ID	Submitter SNP ID	Submitter Handle	Population	ss orientation	Variation Type	129P2/OlaHsd	129S1/SvImJ	129S5/SvEvBrd	A/J	AKR/J	B10.RIII-H2 H2-T18/(71NS)SnJ	BALB/cByJ	BALB/cJ	BTBR T<+> Itpr3/J	BUB/BnJ	C3H/HeH	C3H/HeJ	C57BL/6J	C57BL/6NJ	C57BL/10J	C57BL/10SnJ	C57BR/cdJ	C57L/J	C58/J	CAST/EiJ	CBA/J	CE/J	CZECHII/EiJ	DBA/1J	DBA/2J	FVB/NJ	I/LnJ	JF1/MsJ	KK/HlJ	LP/J	MA/MyJ	MOLF/EiJ	NOD/ShiLtJ	NON/ShiLtJ	NZB/BlNJ	NZO/HlLtJ	NZW/LacJ	PL/J	PWK/PhJ	QSi3/Ianm	QSi5/Ianm	RF/J	RIIIS/J	SEA/GnJ	SJL/J	SPRET/EiJ	ST/bJ	SWR/J	WSB/EiJ	ZALENDE/EiJ
ss394215004	MGP_WTSI_15_59483252	EVA_MGPV3	EVA_MGPV3	f	SNP	C	C	C	C	C	C	C	C	C	C	C	C	C	C	C	C	C	C	C	C	C	C	T	C	C	C	T	T	C	C	C	C	C	C	C	C	C	C	T	C	C	C	C	C	C	C	C	C	C	C
SNP Consensus Information
SNP					Consensus Type	129P2/OlaHsd	129S1/SvImJ	129S5/SvEvBrd	A/J	AKR/J	B10.RIII-H2 H2-T18/(71NS)SnJ	BALB/cByJ	BALB/cJ	BTBR T<+> Itpr3/J	BUB/BnJ	C3H/HeH	C3H/HeJ	C57BL/6J	C57BL/6NJ	C57BL/10J	C57BL/10SnJ	C57BR/cdJ	C57L/J	C58/J	CAST/EiJ	CBA/J	CE/J	CZECHII/EiJ	DBA/1J	DBA/2J	FVB/NJ	I/LnJ	JF1/MsJ	KK/HlJ	LP/J	MA/MyJ	MOLF/EiJ	NOD/ShiLtJ	NON/ShiLtJ	NZB/BlNJ	NZO/HlLtJ	NZW/LacJ	PL/J	PWK/PhJ	QSi3/Ianm	QSi5/Ianm	RF/J	RIIIS/J	SEA/GnJ	SJL/J	SPRET/EiJ	ST/bJ	SWR/J	WSB/EiJ	ZALENDE/EiJ
rs13464995					SNP	C	C	C	C	C	C	C	C	C	C	C	C	C	C	C	C	C	C	C	C	C	C	T	C	C	C	T	T	C	C	C	C	C	C	C	C	C	C	T	C	C	C	C	C	C	C	C	C	C	C

Additional submitted assays for this SNP, where the strain of origin for observed alleles is not specified by the submitter

Assay ID	Submitter SNP ID	Submitter Handle	Population	ss orientation	Variation Type	Alleles
ss394215004	MGP_WTSI_15_59483252	SC_MOUSE_GENOMES	SC_MOUSE_GENOMES	f	SNP	C/T

Gene/Marker
Associations
and
Function
Classes

MGI genes/markers associated with the SNP

Location: Chr15:59523546 () rs orientation: forward

Symbol	Name	Function Class
Cpgi7127	CpG island 7127	1852 bp distal
Rr311787	regulatory region 311787	within coordinates
Rr390806	regulatory region 390806	within coordinates
Trib1	tribbles pseudokinase 1	within coordinates
Tssr4603	transcription start site region 4603	1420 bp upstream
Tssr131392	transcription start site region 131392	940 bp downstream
Tssr131393	transcription start site region 131393	1388 bp upstream
Tssr131394	transcription start site region 131394	1714 bp upstream
Tssr134446	transcription start site region 134446	1083 bp upstream
Tssr134447	transcription start site region 134447	1134 bp downstream
Tssr134448	transcription start site region 134448	1147 bp downstream
Tssr134449	transcription start site region 134449	1205 bp downstream