rs13465154 SNP Detail

Summary

• ID
  rs13465154
• Variation Type
  SNP
• Alleles
  C/T

• Created in dbSNP Build
  121
• Last Updated in dbSNP Build
  137
• Additional Resources
  JBrowse Genome Browser | Ensembl SNPView | UCSC Browser
  

Genome Location and Flanking Sequence

• Location
  Chr15:3309746 (GRCm39)
• SNP Orientation to the Genome
  forward

• SNP Reference Flanking Sequence

                                              GAACAACAAA GACATATTTT
  CCAGTTTTTT TTTTCTTTAC TTAAACTCTG AAAACAACAG AAACTTTGTC TTCCTACTCT
  TACATTCTAA ACCGATGAAA TCTTTAACAG ATTACACTTT AAATATCTAC TCATCATTTT
  CTCTCTCAGA GTCCTAGCTT GAGTTGCACT GCATGTATCT GTGCATCTTG TTCTCTTCAT
  Y
  TAATGCTGTA CTGTTCTGCT GAGCTCTGAG GGACTATCTT GAGAGATGTA ATGGAAGGAA
  AGCGTGGTGT TAATCTGCGT ACTGCTTAAG ACAGTATTTC CATAATCAAT GATGGTTTCA
  TAGAGAAACT AAGTCCTATG AACCTGACCT CTTTTATGGC TAATACGACT AAGCAAGAAT
  GGAGTACAGA ATTAAGTGGC                                            
  
  Y = C/T
  

  
  Note: Sequence in lower case indicates low-complexity or repetitive sequence

  ---

SNP Assays
and
SNP Consensus

Strain alleles of submitted assays, and consensus values for this SNP

Assay ID	Submitter SNP ID	Submitter Handle	Population	ss orientation	Variation Type	129S1/SvImJ	A/J	BALB/cByJ	BTBR T<+> Itpr3/J	C3H/HeJ	CAST/EiJ	DBA/2J	KK/HlJ	MOLF/EiJ	NZW/LacJ	PWD/PhJ	WSB/EiJ
ss62609611	NES17307820	PERLEGEN	MM_PANEL2	f	SNP	T	T	T	T	T	C	T	T	C	T	C	T
SNP Consensus Information
SNP					Consensus Type	129S1/SvImJ	A/J	BALB/cByJ	BTBR T<+> Itpr3/J	C3H/HeJ	CAST/EiJ	DBA/2J	KK/HlJ	MOLF/EiJ	NZW/LacJ	PWD/PhJ	WSB/EiJ
rs13465154					SNP	T	T	T	T	T	C	T	T	C	T	C	T

Additional submitted assays for this SNP, where the strain of origin for observed alleles is not specified by the submitter

Assay ID	Submitter SNP ID	Submitter Handle	Population	ss orientation	Variation Type	Alleles
ss62609611	NES17307820	PERLEGEN	MM_PANEL	f	SNP	C/T

Gene/Marker
Associations
and
Function
Classes

MGI genes/markers associated with the SNP

Location: Chr15:3309746 () rs orientation: forward

Symbol	Name	Function Class
Ccdc152	coiled-coil domain containing 152	within coordinates
Rr498566	regulatory region 498566	1035 bp proximal
Selenop	selenoprotein P	within coordinates
Tssr4538	transcription start site region 4538	1004 bp downstream
Tssr130397	transcription start site region 130397	1134 bp downstream
Tssr130398	transcription start site region 130398	1081 bp downstream
Tssr130399	transcription start site region 130399	992 bp downstream
Tssr130400	transcription start site region 130400	968 bp downstream
Tssr130401	transcription start site region 130401	960 bp downstream
Tssr130402	transcription start site region 130402	896 bp downstream
Tssr130403	transcription start site region 130403	849 bp downstream
Tssr130404	transcription start site region 130404	807 bp downstream
Tssr130405	transcription start site region 130405	789 bp downstream
Tssr130406	transcription start site region 130406	763 bp downstream
Tssr130407	transcription start site region 130407	727 bp downstream
Tssr130408	transcription start site region 130408	697 bp downstream
Tssr130409	transcription start site region 130409	680 bp downstream
Tssr130410	transcription start site region 130410	654 bp downstream
Tssr130411	transcription start site region 130411	606 bp downstream
Tssr130412	transcription start site region 130412	525 bp downstream
Tssr130413	transcription start site region 130413	287 bp downstream
Tssr130414	transcription start site region 130414	233 bp downstream
Tssr130415	transcription start site region 130415	156 bp downstream
Tssr130416	transcription start site region 130416	129 bp upstream
Tssr133563	transcription start site region 133563	1027 bp upstream
Tssr133564	transcription start site region 133564	996 bp upstream
Tssr133565	transcription start site region 133565	952 bp upstream
Tssr133566	transcription start site region 133566	940 bp upstream
Tssr133567	transcription start site region 133567	689 bp upstream
Tssr133568	transcription start site region 133568	562 bp upstream