rs13465157 SNP Detail

Summary

• ID
  rs13465157
• Variation Type
  SNP
• Alleles
  C/G

• Created in dbSNP Build
  121
• Last Updated in dbSNP Build
  142
• Additional Resources
  JBrowse Genome Browser | Ensembl SNPView | UCSC Browser
  

Genome Location and Flanking Sequence

• Location
  Chr15:3309012 (GRCm39)
• SNP Orientation to the Genome
  forward

• SNP Reference Flanking Sequence

                                        GGTCT GCAATTGCTT GACAGTGTGC
  S
  GAAAACCTCC CATCCTTATG TAGCT                                      
  
  S = C/G
  

  
  Note: Sequence in lower case indicates low-complexity or repetitive sequence

  ---

SNP Assays
and
SNP Consensus

Strain alleles of submitted assays, and consensus values for this SNP

Assay ID	Submitter SNP ID	Submitter Handle	Population	ss orientation	Variation Type	129S1/SvImJ	A/J	BALB/cByJ	BTBR T<+> Itpr3/J	C3H/HeJ	CAST/EiJ	DBA/2J	FVB/NJ	KK/HlJ	MOLF/EiJ	NZW/LacJ	PWD/PhJ	WSB/EiJ
ss62609620	NES17307817	PERLEGEN	MM_PANEL2	f	SNP	G	G	G	G	G	G	G	G	G	C	G	C	G
SNP Consensus Information
SNP					Consensus Type	129S1/SvImJ	A/J	BALB/cByJ	BTBR T<+> Itpr3/J	C3H/HeJ	CAST/EiJ	DBA/2J	FVB/NJ	KK/HlJ	MOLF/EiJ	NZW/LacJ	PWD/PhJ	WSB/EiJ
rs13465157					SNP	G	G	G	G	G	G	G	G	G	C	G	C	G

Additional submitted assays for this SNP, where the strain of origin for observed alleles is not specified by the submitter

Assay ID	Submitter SNP ID	Submitter Handle	Population	ss orientation	Variation Type	Alleles
ss62609620	NES17307817	PERLEGEN	MM_PANEL	f	SNP	C/G

Gene/Marker
Associations
and
Function
Classes

MGI genes/markers associated with the SNP

Location: Chr15:3309012 () rs orientation: forward

Symbol	Name	Function Class
Ccdc152	coiled-coil domain containing 152	540 bp downstream
Rr498565	regulatory region 498565	1919 bp distal
Rr498566	regulatory region 498566	1769 bp proximal
Selenop	selenoprotein P	within coordinates
Tssr4538	transcription start site region 4538	270 bp downstream
Tssr130397	transcription start site region 130397	400 bp downstream
Tssr130398	transcription start site region 130398	347 bp downstream
Tssr130399	transcription start site region 130399	258 bp downstream
Tssr130400	transcription start site region 130400	234 bp downstream
Tssr130401	transcription start site region 130401	226 bp downstream
Tssr130402	transcription start site region 130402	162 bp downstream
Tssr130403	transcription start site region 130403	115 bp downstream
Tssr130404	transcription start site region 130404	73 bp downstream
Tssr130405	transcription start site region 130405	55 bp downstream
Tssr130406	transcription start site region 130406	29 bp downstream
Tssr130407	transcription start site region 130407	within coordinates
Tssr130408	transcription start site region 130408	30 bp upstream
Tssr130409	transcription start site region 130409	39 bp upstream
Tssr130410	transcription start site region 130410	60 bp upstream
Tssr130411	transcription start site region 130411	116 bp upstream
Tssr130412	transcription start site region 130412	191 bp upstream
Tssr130413	transcription start site region 130413	444 bp upstream
Tssr130414	transcription start site region 130414	492 bp upstream
Tssr130415	transcription start site region 130415	566 bp upstream
Tssr130416	transcription start site region 130416	863 bp upstream
Tssr133563	transcription start site region 133563	293 bp upstream
Tssr133564	transcription start site region 133564	262 bp upstream
Tssr133565	transcription start site region 133565	218 bp upstream
Tssr133566	transcription start site region 133566	206 bp upstream
Tssr133567	transcription start site region 133567	32 bp downstream
Tssr133568	transcription start site region 133568	103 bp downstream