rs13465291 SNP Detail

Summary

• ID
  rs13465291
• Variation Type
  SNP
• Alleles
  C

• Created in dbSNP Build
  121
• Last Updated in dbSNP Build
  142
• Additional Resources
  JBrowse Genome Browser | Ensembl SNPView | UCSC Browser | Alliance Variant
  

Genome Location and Flanking Sequence

• Location
  Chr2:90943685 (GRCm39)
• SNP Orientation to the Genome
  forward

• SNP Reference Flanking Sequence

                                        AGAAC CACTTCACAG AGCTGCAGAG
  C
  GTGCAGCCCC CGCAGCTACA GCAGC                                      
  
  C = C
  

  
  Note: Sequence in lower case indicates low-complexity or repetitive sequence

  ---

SNP Assays
and
SNP Consensus

Strain alleles of submitted assays, and consensus values for this SNP

Assay ID	Submitter SNP ID	Submitter Handle	Population	ss orientation	Variation Type	LG/J	SM/J
ss320391685	CHEV_2_90953497	CHEVERUD	SCREENING_POP	f	SNP	C	C
SNP Consensus Information
SNP					Consensus Type	LG/J	SM/J
rs13465291					SNP	C	C

Gene/Marker
Associations
and
Function
Classes

MGI genes/markers associated with the SNP

Location: Chr2:90943685 () rs orientation: forward

Symbol	Name	Transcript	Protein	Function Class	Allele	Residue	Codon Position	AA Position
Cpgi11896	CpG island 11896			1702 bp proximal
Rr373534	regulatory region 373534			within coordinates
Rr560649	regulatory region 560649			452 bp distal
Rr560650	regulatory region 560650			600 bp proximal
Rr560651	regulatory region 560651			1849 bp proximal
Rr560652	regulatory region 560652			1912 bp proximal
Spi1	Spi-1 proto-oncogene			Coding-NonSynonymous
				Coding-Synonymous
Tssr18850	transcription start site region 18850			62 bp downstream
Tssr18851	transcription start site region 18851			918 bp upstream
Tssr18852	transcription start site region 18852			975 bp upstream
Tssr18853	transcription start site region 18853			1820 bp upstream
Tssr18854	transcription start site region 18854			1855 bp upstream