rs13465394 SNP Detail

Summary

• ID
  rs13465394
• Variation Type
  SNP
• Alleles
  A/G

• Created in dbSNP Build
  121
• Last Updated in dbSNP Build
  142
• Additional Resources
  JBrowse Genome Browser | Ensembl SNPView | UCSC Browser | Alliance Variant
  

Genome Location and Flanking Sequence

• Location
  Chr12:27387698 (GRCm39)
• SNP Orientation to the Genome
  reverse

• SNP Reference Flanking Sequence

                                        GTTTT GCCCAAGGAA TCTGGGAAAT
  R
  AGGCAAATAA GTTGCTCAAT TTTCA                                      
  
  R = A/G
  

  
  Note: Sequence in lower case indicates low-complexity or repetitive sequence

  ---

SNP Assays
and
SNP Consensus

Strain alleles of submitted assays, and consensus values for this SNP

Assay ID	Submitter SNP ID	Submitter Handle	Population	ss orientation	Variation Type	129X1/SvJ	A/J	C57BL/6J	DBA/2J	LG/J	SM/J
ss38944216	mCV22640867	ABI	CRAMUS_MOUSE	r	SNP	C	C	T	C
ss137464427	ENSMUSSNP5420984	ENSEMBL	ENSEMBL_Sanger	r	SNP	C	C		C
ss323959678	CHEV_12_28022564	CHEVERUD	SCREENING_POP	r	SNP					C	C
SNP Consensus Information
SNP					Consensus Type	129X1/SvJ	A/J	C57BL/6J	DBA/2J	LG/J	SM/J
rs13465394					SNP	G	G	A	G	G	G

Gene/Marker
Associations
and
Function
Classes

MGI genes/markers associated with the SNP

Location: Chr12:27387698 () rs orientation: reverse

Symbol	Name	Function Class
Cpgi4506	CpG island 4506	1048 bp proximal
Rr464224	regulatory region 464224	1547 bp distal
Rr464225	regulatory region 464225	404 bp distal
Rr464226	regulatory region 464226	95 bp proximal
Sox11	SRY (sex determining region Y)-box 11	mRNA-UTR
Tssr113042	transcription start site region 113042	1476 bp downstream
Tssr113043	transcription start site region 113043	1326 bp downstream
Tssr113044	transcription start site region 113044	1664 bp upstream
Tssr115963	transcription start site region 115963	1635 bp upstream
Tssr115964	transcription start site region 115964	1260 bp upstream
Tssr115965	transcription start site region 115965	1211 bp upstream
Tssr115966	transcription start site region 115966	1132 bp upstream
Tssr115967	transcription start site region 115967	862 bp upstream
Tssr115968	transcription start site region 115968	848 bp upstream
Tssr115969	transcription start site region 115969	767 bp upstream
Tssr115970	transcription start site region 115970	732 bp upstream
Tssr115971	transcription start site region 115971	676 bp upstream
Tssr115972	transcription start site region 115972	563 bp upstream
Tssr115973	transcription start site region 115973	201 bp upstream
Tssr115974	transcription start site region 115974	144 bp upstream
Tssr115975	transcription start site region 115975	113 bp upstream
Tssr115976	transcription start site region 115976	93 bp upstream
Tssr115977	transcription start site region 115977	75 bp upstream
Tssr115978	transcription start site region 115978	544 bp downstream
Tssr115979	transcription start site region 115979	636 bp downstream
Tssr115980	transcription start site region 115980	803 bp downstream
Tssr115981	transcription start site region 115981	1484 bp downstream
Tssr115982	transcription start site region 115982	1707 bp downstream