rs13465396 SNP Detail

Summary

• ID
  rs13465396
• Variation Type
  SNP
• Alleles
  A/G

• Created in dbSNP Build
  121
• Last Updated in dbSNP Build
  138
• Additional Resources
  JBrowse Genome Browser | Ensembl SNPView | UCSC Browser | Alliance Variant
  

Genome Location and Flanking Sequence

• Location
  Chr11:58113207 (GRCm39)
• SNP Orientation to the Genome
  forward

• SNP Reference Flanking Sequence

                                        TTTGT CTGTCGTCCT TATGACATTC
  R
  TGTGTACTCA GAAATAATTC CTGAG                                      
  
  R = A/G
  

  
  Note: Sequence in lower case indicates low-complexity or repetitive sequence

  ---

SNP Assays
and
SNP Consensus

Strain alleles of submitted assays, and consensus values for this SNP

Assay ID	Submitter SNP ID	Submitter Handle	Population	ss orientation	Variation Type	129S1/SvImJ	129X1/SvJ	A/J	AKR/J	BALB/cByJ	BTBR T<+> Itpr3/J	C3H/HeJ	C57BL/6J	CAST/EiJ	DBA/2J	KK/HlJ	LG/J	MOLF/EiJ	NOD/ShiLtJ	NZW/LacJ	PWD/PhJ	SM/J	WSB/EiJ
ss37197539	NES08428765	PERLEGEN	MM_PANEL2	f	SNP	A		A	A	A	A	A		G	A	A		A	A	A	A		A
ss38719680	mCV23852110	ABI	CRAMUS_MOUSE	f	SNP		A	A					G		A
ss132192051	ENSMUSSNP7003507	ENSEMBL	ENSEMBL_Sanger	f	SNP		A	A							A
ss323688644	CHEV_11_58035883	CHEVERUD	SCREENING_POP	f	SNP												A					A
SNP Consensus Information
SNP					Consensus Type	129S1/SvImJ	129X1/SvJ	A/J	AKR/J	BALB/cByJ	BTBR T<+> Itpr3/J	C3H/HeJ	C57BL/6J	CAST/EiJ	DBA/2J	KK/HlJ	LG/J	MOLF/EiJ	NOD/ShiLtJ	NZW/LacJ	PWD/PhJ	SM/J	WSB/EiJ
rs13465396					SNP	A	A	A	A	A	A	A	G	G	A	A	A	A	A	A	A	A	A

Additional submitted assays for this SNP, where the strain of origin for observed alleles is not specified by the submitter

Assay ID	Submitter SNP ID	Submitter Handle	Population	ss orientation	Variation Type	Alleles
ss37197539	NES08428765	PERLEGEN	MM_PANEL	f	SNP	A/G

Gene/Marker
Associations
and
Function
Classes

MGI genes/markers associated with the SNP

Location: Chr11:58113207 () rs orientation: forward

Symbol	Name	Function Class
Irgm2	immunity-related GTPase family M member 2	mRNA-UTR
Rr447938	regulatory region 447938	1395 bp proximal
Rr447939	regulatory region 447939	1940 bp proximal
Tssr101709	transcription start site region 101709	1871 bp downstream
Tssr101710	transcription start site region 101710	1853 bp downstream
Tssr101711	transcription start site region 101711	1667 bp downstream
Tssr101712	transcription start site region 101712	1626 bp downstream
Tssr101713	transcription start site region 101713	1307 bp downstream
Tssr101714	transcription start site region 101714	1266 bp downstream