rs13465398 SNP Detail

Summary

• ID
  rs13465398
• Variation Type
  SNP
• Alleles
  C/G

• Created in dbSNP Build
  121
• Last Updated in dbSNP Build
  138
• Additional Resources
  JBrowse Genome Browser | Ensembl SNPView | UCSC Browser | Alliance Variant
  

Genome Location and Flanking Sequence

• Location
  Chr11:58112173 (GRCm39)
• SNP Orientation to the Genome
  forward

• SNP Reference Flanking Sequence

                                        CCTTT GCCATGAAGC ACTCACATTT
  S
  AATCTGTGTG TGTGACTTTG CATTT                                      
  
  S = C/G
  

  
  Note: Sequence in lower case indicates low-complexity or repetitive sequence

  ---

SNP Assays
and
SNP Consensus

Strain alleles of submitted assays, and consensus values for this SNP

Assay ID	Submitter SNP ID	Submitter Handle	Population	ss orientation	Variation Type	129S1/SvImJ	129X1/SvJ	A/J	AKR/J	BALB/cByJ	BTBR T<+> Itpr3/J	C3H/HeJ	C57BL/6J	CAST/EiJ	DBA/2J	KK/HlJ	LG/J	MOLF/EiJ	NOD/ShiLtJ	NZW/LacJ	PWD/PhJ	SM/J	WSB/EiJ
ss37197542	NES08428844	PERLEGEN	MM_PANEL2	f	SNP	C			C	C	C	C		G	C	C		G	C	C	G		C
ss38856533	mCV23852119	ABI	CRAMUS_MOUSE	f	SNP		C	C					G		C
ss132192035	ENSMUSSNP4098660	ENSEMBL	ENSEMBL_Sanger	f	SNP		C	C							C
ss323688641	CHEV_11_58034849	CHEVERUD	SCREENING_POP	f	SNP												C					C
SNP Consensus Information
SNP					Consensus Type	129S1/SvImJ	129X1/SvJ	A/J	AKR/J	BALB/cByJ	BTBR T<+> Itpr3/J	C3H/HeJ	C57BL/6J	CAST/EiJ	DBA/2J	KK/HlJ	LG/J	MOLF/EiJ	NOD/ShiLtJ	NZW/LacJ	PWD/PhJ	SM/J	WSB/EiJ
rs13465398					SNP	C	C	C	C	C	C	C	G	G	C	C	C	G	C	C	G	C	C

Additional submitted assays for this SNP, where the strain of origin for observed alleles is not specified by the submitter

Assay ID	Submitter SNP ID	Submitter Handle	Population	ss orientation	Variation Type	Alleles
ss37197542	NES08428844	PERLEGEN	MM_PANEL	f	SNP	C/G

Gene/Marker
Associations
and
Function
Classes

MGI genes/markers associated with the SNP

Location: Chr11:58112173 () rs orientation: forward

Symbol	Name	Function Class
Irgm2	immunity-related GTPase family M member 2	mRNA-UTR
Tssr101708	transcription start site region 101708	1157 bp downstream
Tssr101709	transcription start site region 101709	837 bp downstream
Tssr101710	transcription start site region 101710	819 bp downstream
Tssr101711	transcription start site region 101711	633 bp downstream
Tssr101712	transcription start site region 101712	592 bp downstream
Tssr101713	transcription start site region 101713	273 bp downstream
Tssr101714	transcription start site region 101714	232 bp downstream