rs13465594 SNP Detail

Summary

• ID
  rs13465594
• Variation Type
  SNP
• Alleles
  G/T

• Created in dbSNP Build
  121
• Last Updated in dbSNP Build
  142
• Additional Resources
  JBrowse Genome Browser | Ensembl SNPView | UCSC Browser
  

Genome Location and Flanking Sequence

• Location
  Chr17:26727139 (GRCm39)
• SNP Orientation to the Genome
  reverse

• SNP Reference Flanking Sequence

                                        ACGTG CGCTTCAGCA CCATCGTGCG
  K
  CGCCGCGCCA AGGGCGCCAT GGGCC                                      
  
  K = G/T
  

  
  Note: Sequence in lower case indicates low-complexity or repetitive sequence

  ---

SNP Assays
and
SNP Consensus

Strain alleles of submitted assays, and consensus values for this SNP

Assay ID	Submitter SNP ID	Submitter Handle	Population	ss orientation	Variation Type	129P2/OlaHsd	129S1/SvImJ	129S5/SvEvBrd	A/J	AKR/J	B10.RIII-H2 H2-T18/(71NS)SnJ	BALB/cByJ	BALB/cJ	BTBR T<+> Itpr3/J	BUB/BnJ	C3H/HeH	C3H/HeJ	C57BL/6J	C57BL/6NJ	C57BL/10J	C57BL/10SnJ	C57BR/cdJ	C57L/J	C58/J	CAST/EiJ	CBA/J	CE/J	CZECHII/EiJ	DBA/1J	DBA/2J	FVB/NJ	I/LnJ	JF1/MsJ	KK/HlJ	LEWES/EiJ	LP/J	MA/MyJ	MOLF/EiJ	NOD/ShiLtJ	NON/ShiLtJ	NZB/BlNJ	NZO/HlLtJ	NZW/LacJ	PL/J	PWK/PhJ	QSi3/Ianm	QSi5/Ianm	RF/J	RIIIS/J	SEA/GnJ	SJL/J	SPRET/EiJ	ST/bJ	SWR/J	WSB/EiJ	ZALENDE/EiJ
ss923492838	MGP_WTSI_17_26508165	EVA_MGPV3	EVA_MGPV3	r	SNP	C	C	C	C	C	C	C	C	C	C	C	C	C	C	C	C	C	C	C	C	C	C	A	C	C	C	C	C	C	C	C	C	A	C	C	C	C	C	C	A	C	C	C	C	C	C	C	C	C	C	C
SNP Consensus Information
SNP					Consensus Type	129P2/OlaHsd	129S1/SvImJ	129S5/SvEvBrd	A/J	AKR/J	B10.RIII-H2 H2-T18/(71NS)SnJ	BALB/cByJ	BALB/cJ	BTBR T<+> Itpr3/J	BUB/BnJ	C3H/HeH	C3H/HeJ	C57BL/6J	C57BL/6NJ	C57BL/10J	C57BL/10SnJ	C57BR/cdJ	C57L/J	C58/J	CAST/EiJ	CBA/J	CE/J	CZECHII/EiJ	DBA/1J	DBA/2J	FVB/NJ	I/LnJ	JF1/MsJ	KK/HlJ	LEWES/EiJ	LP/J	MA/MyJ	MOLF/EiJ	NOD/ShiLtJ	NON/ShiLtJ	NZB/BlNJ	NZO/HlLtJ	NZW/LacJ	PL/J	PWK/PhJ	QSi3/Ianm	QSi5/Ianm	RF/J	RIIIS/J	SEA/GnJ	SJL/J	SPRET/EiJ	ST/bJ	SWR/J	WSB/EiJ	ZALENDE/EiJ
rs13465594					SNP	G	G	G	G	G	G	G	G	G	G	G	G	G	G	G	G	G	G	G	G	G	G	T	G	G	G	G	G	G	G	G	G	T	G	G	G	G	G	G	T	G	G	G	G	G	G	G	G	G	G	G

Additional submitted assays for this SNP, where the strain of origin for observed alleles is not specified by the submitter

Assay ID	Submitter SNP ID	Submitter Handle	Population	ss orientation	Variation Type	Alleles
ss923492838	MGP_WTSI_17_26508165	SC_MOUSE_GENOMES	SC_MOUSE_GENOMES	r	SNP	A/C

Gene/Marker
Associations
and
Function
Classes

MGI genes/markers associated with the SNP

Location: Chr17:26727139 () rs orientation: reverse

Symbol	Name	Function Class
Cpgi8810	CpG island 8810	815 bp distal
Cpgi8811	CpG island 8811	within coordinates
Dusp1	dual specificity phosphatase 1	within coordinates
Gm56886	predicted gene, 56886	371 bp upstream
Rr339410	regulatory region 339410	within coordinates
Rr405112	regulatory region 405112	267 bp upstream
Rr405113	regulatory region 405113	639 bp upstream
Rr406958	regulatory region 406958	687 bp proximal
Tssr5044	transcription start site region 5044	786 bp upstream
Tssr5045	transcription start site region 5045	1298 bp downstream
Tssr5046	transcription start site region 5046	1351 bp downstream
Tssr5047	transcription start site region 5047	1360 bp downstream
Tssr143230	transcription start site region 143230	1794 bp downstream
Tssr143231	transcription start site region 143231	664 bp downstream
Tssr143232	transcription start site region 143232	483 bp upstream
Tssr143233	transcription start site region 143233	532 bp upstream
Tssr143234	transcription start site region 143234	584 bp upstream
Tssr143235	transcription start site region 143235	1536 bp upstream
Tssr143236	transcription start site region 143236	1561 bp upstream
Tssr146941	transcription start site region 146941	1999 bp upstream
Tssr146942	transcription start site region 146942	1977 bp upstream
Tssr146943	transcription start site region 146943	1895 bp upstream
Tssr146944	transcription start site region 146944	1770 bp upstream
Tssr146945	transcription start site region 146945	1707 bp upstream
Tssr146946	transcription start site region 146946	1649 bp upstream
Tssr146947	transcription start site region 146947	1628 bp upstream
Tssr146948	transcription start site region 146948	1602 bp upstream
Tssr146949	transcription start site region 146949	1534 bp upstream
Tssr146950	transcription start site region 146950	993 bp upstream
Tssr146951	transcription start site region 146951	506 bp upstream
Tssr146952	transcription start site region 146952	24 bp downstream
Tssr146953	transcription start site region 146953	49 bp downstream
Tssr146954	transcription start site region 146954	298 bp downstream
Tssr146955	transcription start site region 146955	699 bp downstream
Tssr146956	transcription start site region 146956	1329 bp downstream
Tssr146957	transcription start site region 146957	1394 bp downstream