rs13466198 SNP Detail

Summary

• ID
  rs13466198
• Variation Type
  SNP
• Alleles
  A/G

• Created in dbSNP Build
  121
• Last Updated in dbSNP Build
  142
• Additional Resources
  JBrowse Genome Browser | Ensembl SNPView | UCSC Browser
  

Genome Location and Flanking Sequence

• Location
  Chr18:33570322 (GRCm39)
• SNP Orientation to the Genome
  reverse

• SNP Reference Flanking Sequence

                                        AATGA TGCATGCACT GTCCCTCTTC
  R
  CTCTTTCTCT CGCTTCCCCT CTGGC                                      
  
  R = A/G
  

  
  Note: Sequence in lower case indicates low-complexity or repetitive sequence

  ---

SNP Assays
and
SNP Consensus

Strain alleles of submitted assays, and consensus values for this SNP

Assay ID	Submitter SNP ID	Submitter Handle	Population	ss orientation	Variation Type	129X1/SvJ	A/J	C57BL/6J	DBA/2J	LG/J	SM/J
ss39629468	mCV24523879	ABI	CRAMUS_MOUSE	r	SNP	C	C	T	C
ss146926341	ENSMUSSNP1415704	ENSEMBL	ENSEMBL_Sanger	r	SNP	C	C		C
ss325579764	CHEV_18_33596923	CHEVERUD	SCREENING_POP	r	SNP					C	C
SNP Consensus Information
SNP					Consensus Type	129X1/SvJ	A/J	C57BL/6J	DBA/2J	LG/J	SM/J
rs13466198					SNP	G	G	A	G	G	G

Gene/Marker
Associations
and
Function
Classes

MGI genes/markers associated with the SNP

Location: Chr18:33570322 () rs orientation: reverse

Symbol	Name	Function Class
Nrep	neuronal regeneration related protein	within coordinates
Rr535500	regulatory region 535500	968 bp distal
Tssr152756	transcription start site region 152756	1035 bp downstream
Tssr152757	transcription start site region 152757	1065 bp downstream
Tssr152758	transcription start site region 152758	1352 bp downstream
Tssr152759	transcription start site region 152759	1472 bp downstream