rs13466206 SNP Detail

Summary

• ID
  rs13466206
• Variation Type
  SNP
• Alleles
  A/G

• Created in dbSNP Build
  121
• Last Updated in dbSNP Build
  142
• Additional Resources
  JBrowse Genome Browser | Ensembl SNPView | UCSC Browser
  

Genome Location and Flanking Sequence

• Location
  Chr6:83172658 (GRCm39)
• SNP Orientation to the Genome
  forward

• SNP Reference Flanking Sequence

                                        GGCTG GACGAGACTC AGACCCTGCT
  R
  CGGAAGAAGG AGAAGTGAGC ATCAT                                      
  
  R = A/G
  

  
  Note: Sequence in lower case indicates low-complexity or repetitive sequence

  ---

SNP Assays
and
SNP Consensus

Strain alleles of submitted assays, and consensus values for this SNP

Assay ID	Submitter SNP ID	Submitter Handle	Population	ss orientation	Variation Type	129S1/SvImJ	A/J	AKR/J	BALB/cByJ	BTBR T<+> Itpr3/J	C3H/HeJ	CAST/EiJ	DBA/2J	FVB/NJ	KK/HlJ	LG/J	MOLF/EiJ	NOD/ShiLtJ	NZW/LacJ	PWD/PhJ	SM/J	WSB/EiJ
ss60903738	NES15949682	PERLEGEN	MM_PANEL2	f	SNP	G	A	A	A	A	G	G	G	A	G		G	A	A	G		A
ss133346953	ENSMUSSNP1537381	ENSEMBL	ENSEMBL_Sanger	f	SNP								G
ss321844056	CHEV_6_83145670	CHEVERUD	SCREENING_POP	f	SNP											A					G
SNP Consensus Information
SNP					Consensus Type	129S1/SvImJ	A/J	AKR/J	BALB/cByJ	BTBR T<+> Itpr3/J	C3H/HeJ	CAST/EiJ	DBA/2J	FVB/NJ	KK/HlJ	LG/J	MOLF/EiJ	NOD/ShiLtJ	NZW/LacJ	PWD/PhJ	SM/J	WSB/EiJ
rs13466206					SNP	G	A	A	A	A	G	G	G	A	G	A	G	A	A	G	G	A

Additional submitted assays for this SNP, where the strain of origin for observed alleles is not specified by the submitter

Assay ID	Submitter SNP ID	Submitter Handle	Population	ss orientation	Variation Type	Alleles
ss60903738	NES15949682	PERLEGEN	MM_PANEL	f	SNP	A/G

Gene/Marker
Associations
and
Function
Classes

MGI genes/markers associated with the SNP

Location: Chr6:83172658 () rs orientation: forward

Symbol	Name	Function Class
Dctn1	dynactin 1	within coordinates
Tssr57329	transcription start site region 57329	133 bp upstream
Tssr57330	transcription start site region 57330	162 bp upstream
Tssr57331	transcription start site region 57331	200 bp upstream
Tssr57332	transcription start site region 57332	247 bp upstream
Tssr57333	transcription start site region 57333	284 bp upstream
Tssr57334	transcription start site region 57334	323 bp upstream
Tssr57335	transcription start site region 57335	349 bp upstream