rs13466551 SNP Detail

Summary

• ID
  rs13466551
• Variation Type
  SNP
• Alleles
  G/T

• Created in dbSNP Build
  121
• Last Updated in dbSNP Build
  142
• Additional Resources
  JBrowse Genome Browser | Ensembl SNPView | UCSC Browser
  

Genome Location and Flanking Sequence

• Location
  Chr1:172037906 (GRCm39)
• SNP Orientation to the Genome
  reverse

• SNP Reference Flanking Sequence

                                        ATGAT GATGACGACG ACTAGATGAC
  K
  AGTGGCCGTG GCAGCCGAGT ACCAG                                      
  
  K = G/T
  

  
  Note: Sequence in lower case indicates low-complexity or repetitive sequence

  ---

SNP Assays
and
SNP Consensus

Strain alleles of submitted assays, and consensus values for this SNP

Assay ID	Submitter SNP ID	Submitter Handle	Population	ss orientation	Variation Type	A/J	C57BL/6J	DBA/2J
ss120010350	PARCsnp_1.07442	PARC_SEQ	INBRED	r	SNP		C	A
ss146183990	ENSMUSSNP4981159	ENSEMBL	ENSEMBL_Sanger	r	SNP	A		A
SNP Consensus Information
SNP					Consensus Type	A/J	C57BL/6J	DBA/2J
rs13466551					SNP	T	G	T

Gene/Marker
Associations
and
Function
Classes

MGI genes/markers associated with the SNP

Location: Chr1:172037906 () rs orientation: reverse

Symbol	Name	Function Class
Casq1	calsequestrin 1	within coordinates
Gm17224	predicted gene 17224	within coordinates
Tssr10179	transcription start site region 10179	within coordinates
Tssr15168	transcription start site region 15168	213 bp upstream
Tssr15169	transcription start site region 15169	135 bp upstream
Tssr15170	transcription start site region 15170	113 bp upstream
Tssr15171	transcription start site region 15171	95 bp upstream
Tssr15172	transcription start site region 15172	14 bp upstream
Tssr15173	transcription start site region 15173	69 bp downstream
Tssr15174	transcription start site region 15174	121 bp downstream
Tssr15175	transcription start site region 15175	1644 bp downstream