rs13466560 SNP Detail

Summary

• ID
  rs13466560
• Variation Type
  SNP
• Alleles
  C/G

• Created in dbSNP Build
  121
• Last Updated in dbSNP Build
  142
• Additional Resources
  JBrowse Genome Browser | Ensembl SNPView | UCSC Browser | Alliance Variant
  

Genome Location and Flanking Sequence

• Location
  Chr7:45568860 (GRCm39)
• SNP Orientation to the Genome
  reverse

• SNP Reference Flanking Sequence

                                        TAGGC TGGCTGAAGG CAGTGCAGGC
  S
  CTCATGGTGC TGTCTCTCAT CCTCT                                      
  
  S = C/G
  

  
  Note: Sequence in lower case indicates low-complexity or repetitive sequence

  ---

SNP Assays
and
SNP Consensus

Strain alleles of submitted assays, and consensus values for this SNP

Assay ID	Submitter SNP ID	Submitter Handle	Population	ss orientation	Variation Type	129S1/SvImJ	A/J	AKR/J	BALB/cByJ	BTBR T<+> Itpr3/J	C3H/HeJ	CAST/EiJ	DBA/2J	FVB/NJ	KK/HlJ	MOLF/EiJ	NOD/ShiLtJ	NZW/LacJ	PWD/PhJ	WSB/EiJ
ss46087613	mCV23847665	ABI	CRAMUS_MOUSE	r	SNP		G						C
ss61002553	NES16125172	PERLEGEN	MM_PANEL2	r	SNP	C	G	G	G	G	C	C	C	G	C	C	G	C	C	G
ss149150465	ENSMUSSNP3946439	ENSEMBL	ENSEMBL_Sanger	r	SNP		G						C
SNP Consensus Information
SNP					Consensus Type	129S1/SvImJ	A/J	AKR/J	BALB/cByJ	BTBR T<+> Itpr3/J	C3H/HeJ	CAST/EiJ	DBA/2J	FVB/NJ	KK/HlJ	MOLF/EiJ	NOD/ShiLtJ	NZW/LacJ	PWD/PhJ	WSB/EiJ
rs13466560					SNP	G	C	C	C	C	G	G	G	C	G	G	C	G	G	C

Additional submitted assays for this SNP, where the strain of origin for observed alleles is not specified by the submitter

Assay ID	Submitter SNP ID	Submitter Handle	Population	ss orientation	Variation Type	Alleles
ss61002553	NES16125172	PERLEGEN	MM_PANEL	r	SNP	C/G

Gene/Marker
Associations
and
Function
Classes

MGI genes/markers associated with the SNP

Location: Chr7:45568860 () rs orientation: reverse

Symbol	Name	Transcript	Protein	Function Class	Allele	Residue	Codon Position	AA Position
Emp3	epithelial membrane protein 3			Coding-Synonymous
				mRNA-UTR
Gm72819	predicted gene, 72819			897 bp downstream
Rr400324	regulatory region 400324			1754 bp upstream
Rr646606	regulatory region 646606			1929 bp distal
Rr646607	regulatory region 646607			1448 bp distal
Rr646608	regulatory region 646608			18 bp proximal
Rr646609	regulatory region 646609			1405 bp proximal
Tssr2256	transcription start site region 2256			1860 bp downstream
Tssr66660	transcription start site region 66660			1383 bp downstream
Tssr72489	transcription start site region 72489			77 bp upstream
Tssr72490	transcription start site region 72490			720 bp downstream
Tssr72491	transcription start site region 72491			952 bp downstream
Tssr72492	transcription start site region 72492			1191 bp downstream
Tssr72493	transcription start site region 72493			1215 bp downstream
Tssr72494	transcription start site region 72494			1239 bp downstream
Tssr72495	transcription start site region 72495			1245 bp downstream
Tssr72496	transcription start site region 72496			1264 bp downstream
Tssr72497	transcription start site region 72497			1394 bp downstream
Tssr72498	transcription start site region 72498			1675 bp downstream
Tssr72499	transcription start site region 72499			1825 bp downstream
Tssr72500	transcription start site region 72500			1982 bp downstream