rs13466586 SNP Detail

Summary

• ID
  rs13466586
• Variation Type
  SNP
• Alleles
  C/T

• Created in dbSNP Build
  121
• Last Updated in dbSNP Build
  137
• Additional Resources
  JBrowse Genome Browser | Ensembl SNPView | UCSC Browser
  

Genome Location and Flanking Sequence

• Location
  Chr17:48655687 (GRCm39)
• SNP Orientation to the Genome
  forward

• SNP Reference Flanking Sequence

                                              CTGTCCCAAG CCCTCAACAC
  CACGGTGCTG CAGGGCATGG CCGGCCAGTC CTTGAGGGTG TCATGTACTT ATGACGCCTT
  GAAGCACTGG GGGAGACGCA AGGCCTGGTG TCGGCAGCTG GGTGAGGAGG GCCCATGCCA
  GCGTGTGGTG AGCACACACG GTGTGTGGCT GCTGGCCTTC CTGAAGAAGC GGAATGGGAG
  Y
  ACAGTCATCG CAGATGACAC CCTTGCTGGA ACCGTCACCA TCACTCTGAA GAACCTCCAA
  GCCGGTGACG CGGGCCTCTA CCAGTGTCAG AGTCTCCGAG GCCGAGAGGC TGAGGTCCTG
  CAGAAAGTAC TGGTGGAGGT GCTGGAGGGT GAGTACACAG TAGCTGGGTG CACCTTTGGC
  TGGTCCTTGT GCCAGGTCTT                                            
  
  Y = C/T
  

  
  Note: Sequence in lower case indicates low-complexity or repetitive sequence

  ---

SNP Assays
and
SNP Consensus

Strain alleles of submitted assays, and consensus values for this SNP

Assay ID	Submitter SNP ID	Submitter Handle	Population	ss orientation	Variation Type	A/J	AKR/J	BALB/cByJ	C3H/HeJ	CAST/EiJ	DBA/2J	FVB/NJ	KK/HlJ	LG/J	MOLF/EiJ	NOD/ShiLtJ	NZW/LacJ	SM/J	WSB/EiJ
ss62767913	NES17350337	PERLEGEN	MM_PANEL2	f	SNP	C	C	C	C	C	C	C	T		C	C	C		C
ss325408124	CHEV_17_48487984	CHEVERUD	SCREENING_POP	f	SNP									T				C
SNP Consensus Information
SNP					Consensus Type	A/J	AKR/J	BALB/cByJ	C3H/HeJ	CAST/EiJ	DBA/2J	FVB/NJ	KK/HlJ	LG/J	MOLF/EiJ	NOD/ShiLtJ	NZW/LacJ	SM/J	WSB/EiJ
rs13466586					SNP	C	C	C	C	C	C	C	T	T	C	C	C	C	C

Additional submitted assays for this SNP, where the strain of origin for observed alleles is not specified by the submitter

Assay ID	Submitter SNP ID	Submitter Handle	Population	ss orientation	Variation Type	Alleles
ss62767913	NES17350337	PERLEGEN	MM_PANEL	f	SNP	C/T

Gene/Marker
Associations
and
Function
Classes

MGI genes/markers associated with the SNP

Location: Chr17:48655687 () rs orientation: forward

Symbol	Name	Function Class
Rr335234	regulatory region 335234	1686 bp distal
Trem2	triggering receptor expressed on myeloid cells 2	within coordinates
Tssr145097	transcription start site region 145097	1128 bp downstream
Tssr145098	transcription start site region 145098	786 bp downstream
Tssr145099	transcription start site region 145099	160 bp downstream
Tssr145100	transcription start site region 145100	134 bp downstream
Tssr145101	transcription start site region 145101	93 bp downstream
Tssr145102	transcription start site region 145102	within coordinates
Tssr148525	transcription start site region 148525	31 bp downstream