rs13466720 SNP Detail

Summary

• ID
  rs13466720
• Variation Type
  SNP
• Alleles
  C/T

• Created in dbSNP Build
  121
• Last Updated in dbSNP Build
  138
• Additional Resources
  JBrowse Genome Browser | Ensembl SNPView | UCSC Browser
  

Genome Location and Flanking Sequence

• Location
  Chr2:118711953 (GRCm39)
• SNP Orientation to the Genome
  forward

• SNP Reference Flanking Sequence

                                        TTCAG TTTGCCCTTT GGGAATGGGA
  Y
  AGGAGGCCAG AATAGGAAGT CTCAG                                      
  
  Y = C/T
  

  
  Note: Sequence in lower case indicates low-complexity or repetitive sequence

  ---

SNP Assays
and
SNP Consensus

Strain alleles of submitted assays, and consensus values for this SNP

Assay ID	Submitter SNP ID	Submitter Handle	Population	ss orientation	Variation Type	A/J	C57BL/6J	DBA/2J	LG/J	SM/J
ss45241887	mCV22801704	ABI	CRAMUS_MOUSE	f	SNP	C	T	C
ss147316201	ENSMUSSNP640485	ENSEMBL	ENSEMBL_Sanger	f	SNP	C		C
ss320472438	CHEV_2_118707208	CHEVERUD	SCREENING_POP	f	SNP				T	C
SNP Consensus Information
SNP					Consensus Type	A/J	C57BL/6J	DBA/2J	LG/J	SM/J
rs13466720					SNP	C	T	C	T	C

Gene/Marker
Associations
and
Function
Classes

MGI genes/markers associated with the SNP

Location: Chr2:118711953 () rs orientation: forward

Symbol	Name	Function Class
Cpgi12096	CpG island 12096	1802 bp proximal
Ivd	isovaleryl coenzyme A dehydrogenase	within coordinates
Rr397218	regulatory region 397218	1390 bp upstream