rs13466724 SNP Detail

Summary

• ID
  rs13466724
• Variation Type
  SNP
• Alleles
  A/T

• Created in dbSNP Build
  121
• Last Updated in dbSNP Build
  138
• Additional Resources
  JBrowse Genome Browser | Ensembl SNPView | UCSC Browser
  

Genome Location and Flanking Sequence

• Location
  Chr3:87826936 (GRCm39)
• SNP Orientation to the Genome
  forward

• SNP Reference Flanking Sequence

                                        GTTTT GAGCCTTCCT TTCCGCAATT
  W
  GACTACATCT CCCAAAAATC CGGTG                                      
  
  W = A/T
  

  
  Note: Sequence in lower case indicates low-complexity or repetitive sequence

  ---

SNP Assays
and
SNP Consensus

Strain alleles of submitted assays, and consensus values for this SNP

Assay ID	Submitter SNP ID	Submitter Handle	Population	ss orientation	Variation Type	129S1/SvImJ	129X1/SvJ	A/J	BTBR T<+> Itpr3/J	C57BL/6J	CAST/EiJ	FVB/NJ	LG/J	NOD/ShiLtJ	NZW/LacJ	PWD/PhJ	SM/J	WSB/EiJ
ss45459496	mCV23484212	ABI	CRAMUS_MOUSE	f	SNP			A		T
ss51575528	NES14667375	PERLEGEN	MM_PANEL2	f	SNP	T			A		A	A		A	T	A		T
ss135468780	ENSMUSSNP1763889	ENSEMBL	ENSEMBL_Sanger	f	SNP		T	A
ss320835506	CHEV_3_87723551	CHEVERUD	SCREENING_POP	f	SNP								A				A
SNP Consensus Information
SNP					Consensus Type	129S1/SvImJ	129X1/SvJ	A/J	BTBR T<+> Itpr3/J	C57BL/6J	CAST/EiJ	FVB/NJ	LG/J	NOD/ShiLtJ	NZW/LacJ	PWD/PhJ	SM/J	WSB/EiJ
rs13466724					SNP	T	T	A	A	T	A	A	A	A	T	A	A	T

Additional submitted assays for this SNP, where the strain of origin for observed alleles is not specified by the submitter

Assay ID	Submitter SNP ID	Submitter Handle	Population	ss orientation	Variation Type	Alleles
ss51575528	NES14667375	PERLEGEN	MM_PANEL	f	SNP	A/T

Gene/Marker
Associations
and
Function
Classes

MGI genes/markers associated with the SNP

Location: Chr3:87826936 () rs orientation: forward

Symbol	Name	Function Class
Cpgi13346	CpG island 13346	within coordinates
Gm64606	predicted gene, 64606	226 bp upstream
Mrpl24	mitochondrial ribosomal protein L24	within coordinates
Rr367453	regulatory region 367453	76 bp downstream
Tssr29862	transcription start site region 29862	132 bp downstream
Tssr29863	transcription start site region 29863	103 bp downstream
Tssr29864	transcription start site region 29864	71 bp downstream
Tssr29865	transcription start site region 29865	53 bp downstream
Tssr29866	transcription start site region 29866	31 bp upstream
Tssr29867	transcription start site region 29867	64 bp upstream