rs13466883 SNP Detail

Summary

• ID
  rs13466883
• Variation Type
  SNP
• Alleles
  A/G

• Created in dbSNP Build
  121
• Last Updated in dbSNP Build
  142
• Additional Resources
  JBrowse Genome Browser | Ensembl SNPView | UCSC Browser
  

Genome Location and Flanking Sequence

• Location
  Chr11:115071598 (GRCm39)
• SNP Orientation to the Genome
  forward

• SNP Reference Flanking Sequence

                                        ACCAG TCTGCCTAGA GCATCACTGG
  R
  ACCCGCACTA AACAAGGACC TTTGG                                      
  
  R = A/G
  

  
  Note: Sequence in lower case indicates low-complexity or repetitive sequence

  ---

SNP Assays
and
SNP Consensus

Strain alleles of submitted assays, and consensus values for this SNP

Assay ID	Submitter SNP ID	Submitter Handle	Population	ss orientation	Variation Type	129S1/SvImJ	129X1/SvJ	A/J	AKR/J	BALB/cByJ	BTBR T<+> Itpr3/J	C3H/HeJ	C57BL/6J	CAST/EiJ	DBA/2J	FVB/NJ	KK/HlJ	MOLF/EiJ	NOD/ShiLtJ	NZW/LacJ	PWD/PhJ	WSB/EiJ
ss37248568	NES08521583	PERLEGEN	MM_PANEL2	f	SNP	G		A	A	G	A	A		G	A	A	G	G	G	G	G	A
ss45219514	mCV22628356	ABI	CRAMUS_MOUSE	f	SNP		G	A					A		A
ss132872293	ENSMUSSNP5220739	ENSEMBL	ENSEMBL_Sanger	f	SNP		G	A							A
SNP Consensus Information
SNP					Consensus Type	129S1/SvImJ	129X1/SvJ	A/J	AKR/J	BALB/cByJ	BTBR T<+> Itpr3/J	C3H/HeJ	C57BL/6J	CAST/EiJ	DBA/2J	FVB/NJ	KK/HlJ	MOLF/EiJ	NOD/ShiLtJ	NZW/LacJ	PWD/PhJ	WSB/EiJ
rs13466883					SNP	G	G	A	A	G	A	A	A	G	A	A	G	G	G	G	G	A

Additional submitted assays for this SNP, where the strain of origin for observed alleles is not specified by the submitter

Assay ID	Submitter SNP ID	Submitter Handle	Population	ss orientation	Variation Type	Alleles
ss37248568	NES08521583	PERLEGEN	MM_PANEL	f	SNP	A/G

Gene/Marker
Associations
and
Function
Classes

MGI genes/markers associated with the SNP

Location: Chr11:115071598 () rs orientation: forward

Symbol	Name	Function Class
Nherf1	NHERF family PDZ scaffold protein 1	within coordinates
Rr459791	regulatory region 459791	1165 bp distal
Rr459792	regulatory region 459792	1058 bp proximal
Rr459793	regulatory region 459793	1718 bp proximal
Tssr105846	transcription start site region 105846	732 bp downstream
Tssr105847	transcription start site region 105847	452 bp downstream
Tssr105848	transcription start site region 105848	183 bp upstream