rs13466931 SNP Detail

Summary

• ID
  rs13466931
• Variation Type
  SNP
• Alleles
  G/T

• Created in dbSNP Build
  121
• Last Updated in dbSNP Build
  137
• Additional Resources
  JBrowse Genome Browser | Ensembl SNPView | UCSC Browser | Alliance Variant
  

Genome Location and Flanking Sequence

• Location
  Chr10:121423647 (GRCm39)
• SNP Orientation to the Genome
  reverse

• SNP Reference Flanking Sequence

             AGGCACCATA AAACCCTCTG TCTTCTCACC TGTAACAAAT GAGATTCCCT
  K
  GAGAGAATTA TTTGGGTGCT TGCTTTTAAA AATCAGGTAC TCAATGACGG           
  
  K = G/T
  

  
  Note: Sequence in lower case indicates low-complexity or repetitive sequence

  ---

SNP Assays
and
SNP Consensus

Strain alleles of submitted assays, and consensus values for this SNP

Assay ID	Submitter SNP ID	Submitter Handle	Population	ss orientation	Variation Type	LG/J	SM/J
ss323513553	CHEV_10_121024798	CHEVERUD	SCREENING_POP	r	SNP	A	C
SNP Consensus Information
SNP					Consensus Type	LG/J	SM/J
rs13466931					SNP	T	G

Gene/Marker
Associations
and
Function
Classes

MGI genes/markers associated with the SNP

Location: Chr10:121423647 () rs orientation: reverse

Symbol	Name	Function Class
Cpgi2289	CpG island 2289	422 bp distal
Rr402304	regulatory region 402304	1569 bp downstream
Rr402305	regulatory region 402305	716 bp downstream
Rr440247	regulatory region 440247	966 bp distal
Rr440248	regulatory region 440248	465 bp distal
Tbk1	TANK-binding kinase 1	955 bp upstream
Tssr96043	transcription start site region 96043	1500 bp downstream
Tssr96044	transcription start site region 96044	1479 bp downstream
Tssr99623	transcription start site region 99623	1859 bp upstream
Tssr99624	transcription start site region 99624	1832 bp upstream
Tssr99625	transcription start site region 99625	1772 bp upstream
Tssr99626	transcription start site region 99626	1021 bp upstream
Tssr99627	transcription start site region 99627	939 bp upstream
Tssr99628	transcription start site region 99628	918 bp upstream
Tssr99629	transcription start site region 99629	890 bp upstream
Tssr99630	transcription start site region 99630	862 bp upstream
Xpot	exportin, tRNA (nuclear export receptor for tRNAs)	mRNA-UTR