rs13466950 SNP Detail

Summary

• ID
  rs13466950
• Variation Type
  SNP
• Alleles
  G/T

• Created in dbSNP Build
  121
• Last Updated in dbSNP Build
  142
• Additional Resources
  JBrowse Genome Browser | Ensembl SNPView | UCSC Browser | Alliance Variant
  

Genome Location and Flanking Sequence

• Location
  Chr4:133857891 (GRCm39)
• SNP Orientation to the Genome
  reverse

• SNP Reference Flanking Sequence

                                        CGCTA TGTCGTCTAG GAGTACAGAC
  K
  CCTCTGTGGT TGCCTCGTGG TTCCC                                      
  
  K = G/T
  

  
  Note: Sequence in lower case indicates low-complexity or repetitive sequence

  ---

SNP Assays
and
SNP Consensus

Strain alleles of submitted assays, and consensus values for this SNP

Assay ID	Submitter SNP ID	Submitter Handle	Population	ss orientation	Variation Type	129X1/SvJ	A/J	C57BL/6J	DBA/2J	LG/J	MSM/Ms	SM/J
ss45581043	mCV24804672	ABI	CRAMUS_MOUSE	r	SNP	C	C	A	C
ss147518565	ENSMUSSNP6077498	ENSEMBL	ENSEMBL_Sanger	r	SNP	C	C		C		A
ss321345461	CHEV_4_133686495	CHEVERUD	SCREENING_POP	r	SNP					C		C
SNP Consensus Information
SNP					Consensus Type	129X1/SvJ	A/J	C57BL/6J	DBA/2J	LG/J	MSM/Ms	SM/J
rs13466950					SNP	G	G	T	G	G	T	G

Gene/Marker
Associations
and
Function
Classes

MGI genes/markers associated with the SNP

Location: Chr4:133857891 () rs orientation: reverse

Symbol	Name	Function Class
Cep85	centrosomal protein 85	mRNA-UTR
Gm68742	predicted gene, 68742	969 bp upstream
Rr601575	regulatory region 601575	1301 bp distal
Rr601576	regulatory region 601576	720 bp distal
Rr601577	regulatory region 601577	880 bp distal
Rr601578	regulatory region 601578	732 bp distal
Sh3bgrl3	SH3 domain binding glutamic acid-rich protein-like 3	1847 bp upstream
Tssr43875	transcription start site region 43875	1880 bp upstream
Tssr43876	transcription start site region 43876	1810 bp upstream
Tssr43877	transcription start site region 43877	969 bp upstream