rs13467401 SNP Detail

Summary

• ID
  rs13467401
• Variation Type
  SNP
• Alleles
  C/T

• Created in dbSNP Build
  121
• Last Updated in dbSNP Build
  142
• Additional Resources
  JBrowse Genome Browser | Ensembl SNPView | UCSC Browser
  

Genome Location and Flanking Sequence

• Location
  Chr2:110192799 (GRCm39)
• SNP Orientation to the Genome
  reverse

• SNP Reference Flanking Sequence

                                        CCTAC GACCTGGATG GGGAAGAGAG
  Y
  TATGGCAAGT ACCTGAGGCG GGAGT                                      
  
  Y = C/T
  

  
  Note: Sequence in lower case indicates low-complexity or repetitive sequence

  ---

SNP Assays
and
SNP Consensus

Strain alleles of submitted assays, and consensus values for this SNP

Assay ID	Submitter SNP ID	Submitter Handle	Population	ss orientation	Variation Type	129X1/SvJ	C57BL/6J	DBA/2J	LG/J	SM/J
ss45271307	mCV24372751	ABI	CRAMUS_MOUSE	r	SNP	A	G	A
ss147209383	ENSMUSSNP6084389	ENSEMBL	ENSEMBL_Sanger	r	SNP	A		A
ss320456752	CHEV_2_110202611	CHEVERUD	SCREENING_POP	r	SNP				G	A
SNP Consensus Information
SNP					Consensus Type	129X1/SvJ	C57BL/6J	DBA/2J	LG/J	SM/J
rs13467401					SNP	T	C	T	C	T

Gene/Marker
Associations
and
Function
Classes

MGI genes/markers associated with the SNP

Location: Chr2:110192799 () rs orientation: reverse

Symbol	Name	Function Class
Cpgi12041	CpG island 12041	159 bp proximal
Fibin	fin bud initiation factor homolog (zebrafish)	within coordinates
Gm30319	predicted gene, 30319	within coordinates
Rr55365	regulatory region 55365	within coordinates
Tssr25605	transcription start site region 25605	450 bp downstream
Tssr25606	transcription start site region 25606	501 bp downstream
Tssr25607	transcription start site region 25607	531 bp downstream
Tssr25608	transcription start site region 25608	638 bp downstream
Tssr25609	transcription start site region 25609	661 bp downstream
Tssr25610	transcription start site region 25610	681 bp downstream
Tssr25611	transcription start site region 25611	703 bp downstream