rs13467459 SNP Detail

Summary

• ID
  rs13467459
• Variation Type
  SNP
• Alleles
  C/T

• Created in dbSNP Build
  121
• Last Updated in dbSNP Build
  138
• Additional Resources
  JBrowse Genome Browser | Ensembl SNPView | UCSC Browser
  

Genome Location and Flanking Sequence

• Location
  Chr8:71231044 (GRCm39)
• SNP Orientation to the Genome
  reverse

• SNP Reference Flanking Sequence

                                        AGGCC AGAGGCATGT CCCACAATGG
  Y
  CCAGTAAGAG TGGCAGCCCA GGACA                                      
  
  Y = C/T
  

  
  Note: Sequence in lower case indicates low-complexity or repetitive sequence

  ---

SNP Assays
and
SNP Consensus

Strain alleles of submitted assays, and consensus values for this SNP

Assay ID	Submitter SNP ID	Submitter Handle	Population	ss orientation	Variation Type	129X1/SvJ	A/J	C57BL/6J	DBA/2J	LG/J	SM/J
ss46184814	mCV27563057	ABI	CRAMUS_MOUSE	r	SNP	G	A	A	G
ss145131476	ENSMUSSNP2216092	ENSEMBL	ENSEMBL_Sanger	r	SNP	G	A
ss322701507	CHEV_8_73302299	CHEVERUD	SCREENING_POP	r	SNP					G	G
SNP Consensus Information
SNP					Consensus Type	129X1/SvJ	A/J	C57BL/6J	DBA/2J	LG/J	SM/J
rs13467459					SNP	C	T	T	C	C	C

Gene/Marker
Associations
and
Function
Classes

MGI genes/markers associated with the SNP

Location: Chr8:71231044 () rs orientation: reverse

Symbol	Name	Function Class
2010320M18Rik	RIKEN cDNA 2010320M18 gene	794 bp downstream
Cpgi20500	CpG island 20500	677 bp distal
Mast3	microtubule associated serine/threonine kinase 3	within coordinates
Pik3r2	phosphoinositide-3-kinase regulatory subunit 2	1688 bp upstream
Rr186787	regulatory region 186787	within coordinates
Rr368551	regulatory region 368551	992 bp downstream
Rr400915	regulatory region 400915	1486 bp downstream
Tssr77827	transcription start site region 77827	1627 bp downstream
Tssr77828	transcription start site region 77828	1571 bp downstream
Tssr77829	transcription start site region 77829	1503 bp downstream
Tssr77830	transcription start site region 77830	1036 bp downstream
Tssr81673	transcription start site region 81673	1760 bp upstream
Tssr81674	transcription start site region 81674	1684 bp upstream
Tssr81675	transcription start site region 81675	1669 bp upstream