rs13467801 SNP Detail

Summary

• ID
  rs13467801
• Variation Type
  SNP
• Alleles
  C

• Created in dbSNP Build
  121
• Last Updated in dbSNP Build
  137
• Additional Resources
  JBrowse Genome Browser | Ensembl SNPView | UCSC Browser | Alliance Variant
  

Genome Location and Flanking Sequence

• Location
  Chr1:9616775 (GRCm39)
• SNP Orientation to the Genome
  forward

• SNP Reference Flanking Sequence

                        AGGCAAGAGG AAAGGGGGCC GGCAAGGACC TTCGGGCAAG
  AGAAAGGGCG GCCCGCCGGG TCAGGGAGAA AAGAGGAAAG GAGGCTTGGG AAGCAAAAAG
  C
  ATTCCTGGCC TTCTGCTTTA GCTGGCAAGA AGAAAGGAGT GCCGCCCCAA GGTGGGAAGA
  GGAGGAAGTA GCGTTCTCCC CTCGGGACCA GTTCTGAAA                       
  
  C = C
  

  
  Note: Sequence in lower case indicates low-complexity or repetitive sequence

  ---

SNP Assays
and
SNP Consensus

Strain alleles of submitted assays, and consensus values for this SNP

Assay ID	Submitter SNP ID	Submitter Handle	Population	ss orientation	Variation Type	A/J
ss148565768	ENSMUSSNP3221093	ENSEMBL	ENSEMBL_Sanger	f	SNP	C
SNP Consensus Information
SNP					Consensus Type	A/J
rs13467801					SNP	C

Gene/Marker
Associations
and
Function
Classes

MGI genes/markers associated with the SNP

Location: Chr1:9616775 () rs orientation: forward

Symbol	Name	Function Class
Adhfe1	alcohol dehydrogenase, iron containing, 1	1398 bp upstream
Cpgi23	CpG island 23	311 bp distal
Rr395961	regulatory region 395961	1154 bp downstream
Rr407596	regulatory region 407596	1352 bp distal
Rr407597	regulatory region 407597	1132 bp distal
Rr407598	regulatory region 407598	1196 bp distal
Rr407599	regulatory region 407599	968 bp distal
Rr407600	regulatory region 407600	3 bp distal
Rr407601	regulatory region 407601	390 bp distal
Rr407602	regulatory region 407602	971 bp proximal
Rr407603	regulatory region 407603	1409 bp proximal
Rrs1	ribosome biogenesis regulator 1	Coding-NonSynonymous
Tssr5894	transcription start site region 5894	1162 bp downstream
Tssr5895	transcription start site region 5895	1071 bp downstream
Tssr5896	transcription start site region 5896	1055 bp downstream
Tssr5897	transcription start site region 5897	562 bp downstream
Tssr5898	transcription start site region 5898	1499 bp upstream
Tssr5899	transcription start site region 5899	1564 bp upstream