rs13467834 SNP Detail

Summary

• ID
  rs13467834
• Variation Type
  SNP
• Alleles
  C/T

• Created in dbSNP Build
  121
• Last Updated in dbSNP Build
  137
• Additional Resources
  JBrowse Genome Browser | Ensembl SNPView | UCSC Browser | Alliance Variant
  

Genome Location and Flanking Sequence

• Location
  Chr2:121978270 (GRCm39)
• SNP Orientation to the Genome
  forward

• SNP Reference Flanking Sequence

                        TCAGTGGCTG CTACTCGGCG CTTCAGTCGC GGTCGCTTCA
  GTCGTCAGCA TGGCTCGCTC GGTGACCCTG GTCTTTCTGG TGCTTGTCTC ACTGACCGGC
  Y
  TGTATGCTAT CCAGAGTGAG TGCCTCTTTC CCCTCTCTTG GCATTAAATT TTTAGTTCTC
  CTTAGTTCTC CTTCCCGACG GGATTGGCCA GGGCTGCGT                       
  
  Y = C/T
  

  
  Note: Sequence in lower case indicates low-complexity or repetitive sequence

  ---

SNP Assays
and
SNP Consensus

Strain alleles of submitted assays, and consensus values for this SNP

Assay ID	Submitter SNP ID	Submitter Handle	Population	ss orientation	Variation Type	129S1/SvImJ	A/J	C57BL/6J	DBA/2J	LG/J	SM/J
ss45214094	mCV24434389	ABI	CRAMUS_MOUSE	f	SNP	C	T	C	T
ss147409997	ENSMUSSNP555383	ENSEMBL	ENSEMBL_Sanger	f	SNP		T		T
ss320487202	CHEV_2_121973525	CHEVERUD	SCREENING_POP	f	SNP					C	T
SNP Consensus Information
SNP					Consensus Type	129S1/SvImJ	A/J	C57BL/6J	DBA/2J	LG/J	SM/J
rs13467834					SNP	C	T	C	T	C	T

Gene/Marker
Associations
and
Function
Classes

MGI genes/markers associated with the SNP

Location: Chr2:121978270 () rs orientation: forward

Symbol	Name	Function Class
B2m	beta-2 microglobulin	Coding-Synonymous
Cpgi12169	CpG island 12169	within coordinates
Patl2	protein associated with topoisomerase II homolog 2 (yeast)	Intron
Rr397252	regulatory region 397252	60 bp downstream
Rr563912	regulatory region 563912	93 bp distal
Rr563913	regulatory region 563913	within coordinates
Tssr19804	transcription start site region 19804	295 bp downstream
Tssr19805	transcription start site region 19805	93 bp downstream
Tssr19806	transcription start site region 19806	61 bp downstream
Tssr19807	transcription start site region 19807	1375 bp upstream
Tssr19808	transcription start site region 19808	1428 bp upstream
Tssr19809	transcription start site region 19809	1772 bp upstream
Tssr25953	transcription start site region 25953	832 bp upstream
Tssr25954	transcription start site region 25954	269 bp upstream