rs13467835 SNP Detail

Summary

• ID
  rs13467835
• Variation Type
  SNP
• Alleles
  A/C

• Created in dbSNP Build
  121
• Last Updated in dbSNP Build
  142
• Additional Resources
  JBrowse Genome Browser | Ensembl SNPView | UCSC Browser
  

Genome Location and Flanking Sequence

• Location
  Chr2:121981600 (GRCm39)
• SNP Orientation to the Genome
  forward

• SNP Reference Flanking Sequence

                                        ACATA CGCCTGCAGA GTTAAGCATG
  M
  CAGTATGGCC GAGCCCAAGA CCGTC                                      
  
  M = A/C
  

  
  Note: Sequence in lower case indicates low-complexity or repetitive sequence

  ---

SNP Assays
and
SNP Consensus

Strain alleles of submitted assays, and consensus values for this SNP

Assay ID	Submitter SNP ID	Submitter Handle	Population	ss orientation	Variation Type	129S1/SvImJ	129X1/SvJ	A/J	AKR/J	BALB/cByJ	BTBR T<+> Itpr3/J	C3H/HeJ	C57BL/6J	DBA/2J	FVB/NJ	KK/HlJ	LG/J	MOLF/EiJ	NOD/ShiLtJ	NZW/LacJ	PWD/PhJ	SM/J	WSB/EiJ
ss37644519	NES09020157	PERLEGEN	MM_PANEL2	f	SNP	A		A	A	A	A	A		A	A	C		C	A	A	C		A
ss45311138	mCV24434695	ABI	CRAMUS_MOUSE	f	SNP		A	A					C
ss147410075	ENSMUSSNP3930127	ENSEMBL	ENSEMBL_Sanger	f	SNP		A	A
ss320487217	CHEV_2_121976855	CHEVERUD	SCREENING_POP	f	SNP												C					A
SNP Consensus Information
SNP					Consensus Type	129S1/SvImJ	129X1/SvJ	A/J	AKR/J	BALB/cByJ	BTBR T<+> Itpr3/J	C3H/HeJ	C57BL/6J	DBA/2J	FVB/NJ	KK/HlJ	LG/J	MOLF/EiJ	NOD/ShiLtJ	NZW/LacJ	PWD/PhJ	SM/J	WSB/EiJ
rs13467835					SNP	A	A	A	A	A	A	A	C	A	A	C	C	C	A	A	C	A	A

Additional submitted assays for this SNP, where the strain of origin for observed alleles is not specified by the submitter

Assay ID	Submitter SNP ID	Submitter Handle	Population	ss orientation	Variation Type	Alleles
ss37644519	NES09020157	PERLEGEN	MM_PANEL	f	SNP	A/C

Gene/Marker
Associations
and
Function
Classes

MGI genes/markers associated with the SNP

Location: Chr2:121981600 () rs orientation: forward

Symbol	Name	Function Class
B2m	beta-2 microglobulin	within coordinates
Patl2	protein associated with topoisomerase II homolog 2 (yeast)	within coordinates
Tssr19807	transcription start site region 19807	1935 bp downstream
Tssr19808	transcription start site region 19808	1861 bp downstream
Tssr19809	transcription start site region 19809	1545 bp downstream
Tssr19810	transcription start site region 19810	510 bp downstream
Tssr19811	transcription start site region 19811	233 bp downstream
Tssr19812	transcription start site region 19812	189 bp downstream
Tssr19813	transcription start site region 19813	171 bp downstream
Tssr19814	transcription start site region 19814	153 bp downstream
Tssr19815	transcription start site region 19815	139 bp downstream
Tssr19816	transcription start site region 19816	118 bp downstream
Tssr19817	transcription start site region 19817	93 bp downstream
Tssr19818	transcription start site region 19818	34 bp downstream
Tssr19819	transcription start site region 19819	15 bp downstream
Tssr19820	transcription start site region 19820	1489 bp upstream
Tssr19821	transcription start site region 19821	1520 bp upstream
Tssr19822	transcription start site region 19822	1632 bp upstream
Tssr19823	transcription start site region 19823	1665 bp upstream
Tssr19824	transcription start site region 19824	1720 bp upstream
Tssr19825	transcription start site region 19825	1743 bp upstream
Tssr19826	transcription start site region 19826	1783 bp upstream
Tssr19827	transcription start site region 19827	1812 bp upstream
Tssr19828	transcription start site region 19828	1849 bp upstream
Tssr19829	transcription start site region 19829	1893 bp upstream
Tssr25955	transcription start site region 25955	197 bp upstream
Tssr25956	transcription start site region 25956	121 bp upstream
Tssr25957	transcription start site region 25957	within coordinates
Tssr25958	transcription start site region 25958	1743 bp downstream
Tssr25959	transcription start site region 25959	1943 bp downstream