rs13467836 SNP Detail

Summary

• ID
  rs13467836
• Variation Type
  SNP
• Alleles
  A/G

• Created in dbSNP Build
  121
• Last Updated in dbSNP Build
  138
• Additional Resources
  JBrowse Genome Browser | Ensembl SNPView | UCSC Browser
  

Genome Location and Flanking Sequence

• Location
  Chr2:121983252 (GRCm39)
• SNP Orientation to the Genome
  forward

• SNP Reference Flanking Sequence

                                        ACCTT CTTTATATCT TACTTTAAAT
  R
  TTTTATGCAT GTTTTCAAAA AATTG                                      
  
  R = A/G
  

  
  Note: Sequence in lower case indicates low-complexity or repetitive sequence

  ---

SNP Assays
and
SNP Consensus

Strain alleles of submitted assays, and consensus values for this SNP

Assay ID	Submitter SNP ID	Submitter Handle	Population	ss orientation	Variation Type	129X1/SvJ	A/J	C57BL/6J	DBA/2J	LG/J	SM/J
ss45260092	mCV24434705	ABI	CRAMUS_MOUSE	f	SNP	G	G	A	G
ss147410100	ENSMUSSNP517346	ENSEMBL	ENSEMBL_Sanger	f	SNP	G	G		G
ss320487219	CHEV_2_121978507	CHEVERUD	SCREENING_POP	f	SNP					A	G
SNP Consensus Information
SNP					Consensus Type	129X1/SvJ	A/J	C57BL/6J	DBA/2J	LG/J	SM/J
rs13467836					SNP	G	G	A	G	A	G

Gene/Marker
Associations
and
Function
Classes

MGI genes/markers associated with the SNP

Location: Chr2:121983252 () rs orientation: forward

Symbol	Name	Function Class
B2m	beta-2 microglobulin	within coordinates
Patl2	protein associated with topoisomerase II homolog 2 (yeast)	within coordinates
Tssr19811	transcription start site region 19811	1885 bp downstream
Tssr19812	transcription start site region 19812	1841 bp downstream
Tssr19813	transcription start site region 19813	1823 bp downstream
Tssr19814	transcription start site region 19814	1805 bp downstream
Tssr19815	transcription start site region 19815	1791 bp downstream
Tssr19816	transcription start site region 19816	1770 bp downstream
Tssr19817	transcription start site region 19817	1745 bp downstream
Tssr19818	transcription start site region 19818	1686 bp downstream
Tssr19819	transcription start site region 19819	1667 bp downstream
Tssr19820	transcription start site region 19820	152 bp downstream
Tssr19821	transcription start site region 19821	21 bp downstream
Tssr19822	transcription start site region 19822	9 bp downstream
Tssr19823	transcription start site region 19823	13 bp upstream
Tssr19824	transcription start site region 19824	68 bp upstream
Tssr19825	transcription start site region 19825	91 bp upstream
Tssr19826	transcription start site region 19826	131 bp upstream
Tssr19827	transcription start site region 19827	160 bp upstream
Tssr19828	transcription start site region 19828	197 bp upstream
Tssr19829	transcription start site region 19829	241 bp upstream
Tssr25955	transcription start site region 25955	1849 bp upstream
Tssr25956	transcription start site region 25956	1773 bp upstream
Tssr25957	transcription start site region 25957	1641 bp upstream
Tssr25958	transcription start site region 25958	91 bp downstream
Tssr25959	transcription start site region 25959	291 bp downstream