rs13467955 SNP Detail

Summary

• ID
  rs13467955
• Variation Type
  SNP
• Alleles
  C/T

• Created in dbSNP Build
  121
• Last Updated in dbSNP Build
  137
• Additional Resources
  JBrowse Genome Browser | Ensembl SNPView | UCSC Browser
  

Genome Location and Flanking Sequence

• Location
  Chr5:137638724 (GRCm39)
• SNP Orientation to the Genome
  forward

• SNP Reference Flanking Sequence

                                              GCCCCACTCT CATACCCACA
  ATACCCTTAC CCTTAGTGCT GATGGTGCCT TCGTGTTCTC CCGGCCAGCC CTCTGTCCCC
  CGTCGGATGA CAGGACTGTG GCTTTTCTCT TCTGTCCTCC CTCCCCCTAC CAGCTGCTAT
  GGGGGAGCTA AATTATCTCT GTTTTGTAGA GAGAACTATT AGCAGGGGAT GTGAGCCCAG
  Y
  ATGGGCCCCT GGCTCTGTGT ATAAACTGTA TAGATTGTCA CCTCTGTGTG TGCGTGTGTG
  AGCTCCTGCT GCAGCCAGGT CTTGTCCTGC CTGGGCTACC TGCCTGTGCA AGCCTTTCCC
  TTTGGAAATG ACAGGCCTCT CCTGTCCCAG TCCCCTGTGT TAACCACCCG TCTGTTACCT
  GCTGGCAGCT TCTATGTGTC                                            
  
  Y = C/T
  

  
  Note: Sequence in lower case indicates low-complexity or repetitive sequence

  ---

SNP Assays
and
SNP Consensus

Strain alleles of submitted assays, and consensus values for this SNP

Assay ID	Submitter SNP ID	Submitter Handle	Population	ss orientation	Variation Type	LG/J	SM/J
ss321702658	CHEV_5_138081690	CHEVERUD	SCREENING_POP	f	SNP	C	T
SNP Consensus Information
SNP					Consensus Type	LG/J	SM/J
rs13467955					SNP	C	T

Gene/Marker
Associations
and
Function
Classes

MGI genes/markers associated with the SNP

Location: Chr5:137638724 () rs orientation: forward

Symbol	Name	Function Class
Cpgi16844	CpG island 16844	653 bp proximal
Gm20605	predicted gene 20605	within coordinates
Lrch4	leucine-rich repeats and calponin homology (CH) domain containing 4	within coordinates
Sap25	sin3 associated polypeptide	1011 bp upstream
Tssr49363	transcription start site region 49363	1955 bp downstream
Tssr49364	transcription start site region 49364	814 bp upstream