rs13467957 SNP Detail

Summary

• ID
  rs13467957
• Variation Type
  SNP
• Alleles
  C/T

• Created in dbSNP Build
  121
• Last Updated in dbSNP Build
  137
• Additional Resources
  JBrowse Genome Browser | Ensembl SNPView | UCSC Browser
  

Genome Location and Flanking Sequence

• Location
  Chr5:137638875 (GRCm39)
• SNP Orientation to the Genome
  forward

• SNP Reference Flanking Sequence

                                              ATTATCTCTG TTTTGTAGAG
  AGAACTATTA GCAGGGGATG TGAGCCCAGT ATGGGCCCCT GGCTCTGTGT ATAAACTGTA
  TAGATTGTCA CCTCTGTGTG TGCGTGTGTG AGCTCCTGCT GCAGCCAGGT CTTGTCCTGC
  CTGGGCTACC TGCCTGTGCA AGCCTTTCCC TTTGGAAATG ACAGGCCTCT CCTGTCCCAG
  Y
  CCCCTGTGTT AACCACCCGT CTGTTACCTG CTGGCAGCTT CTATGTGTCA TTTGTCCCCA
  GGTATGGGGC AGTGTCTACC AGGAGTTCCC ACCCTCTTAA CCTTGCTGGG GGAATTCGAG
  GGGGAAACCT AACCTGGGCC CCTCCCCCCA GGAGTCCCTG TGCCAGCCCC ACCACATCCT
  GGAAGAGGAA GGGGCCCCTG                                            
  
  Y = C/T
  

  
  Note: Sequence in lower case indicates low-complexity or repetitive sequence

  ---

SNP Assays
and
SNP Consensus

Strain alleles of submitted assays, and consensus values for this SNP

Assay ID	Submitter SNP ID	Submitter Handle	Population	ss orientation	Variation Type	LG/J	SM/J
ss321702659	CHEV_5_138081841	CHEVERUD	SCREENING_POP	f	SNP	C	T
SNP Consensus Information
SNP					Consensus Type	LG/J	SM/J
rs13467957					SNP	C	T

Gene/Marker
Associations
and
Function
Classes

MGI genes/markers associated with the SNP

Location: Chr5:137638875 () rs orientation: forward

Symbol	Name	Function Class
Cpgi16844	CpG island 16844	502 bp proximal
Gm20605	predicted gene 20605	within coordinates
Lrch4	leucine-rich repeats and calponin homology (CH) domain containing 4	within coordinates
Sap25	sin3 associated polypeptide	860 bp upstream
Tssr49364	transcription start site region 49364	663 bp upstream