rs13467958 SNP Detail

Summary

• ID
  rs13467958
• Variation Type
  SNP
• Alleles
  A/G

• Created in dbSNP Build
  121
• Last Updated in dbSNP Build
  137
• Additional Resources
  JBrowse Genome Browser | Ensembl SNPView | UCSC Browser
  

Genome Location and Flanking Sequence

• Location
  Chr5:137637695 (GRCm39)
• SNP Orientation to the Genome
  forward

• SNP Reference Flanking Sequence

                                              GCCTGGCGTC TCCTTCCCCT
  CTCCTTCCTC AGCCCACAAC TCCTGTTATC GAGGAGGGGA AGGGATGGAG GGAGTGACCT
  TGCTGACCCC AGCTGCTGCT TCTGTCTCTG CTTCCAGGTC CTAGAGTCGC GGCTGCAGCA
  GCCCCTACCT GAGGACCTGG CAGAAGCTCT CGCCAACGGA GTCCTCCTTT GCCAGCTGGC
  R
  AACCAGCTGC GGCCCCGCTC TGTACCCTTC ATTCATGTGC CCTCACCTGC TGTGGTCAGT
  GGGAGCCCAA AAGGAAGAAG AGGGGAAGGG ACGTGACTGT GGCTTTGCCT TTCCAAATTT
  CTTCCCTTTC TCCTCTGTCT CCAGCCAAAG CTCAGTGCTC TCAAGTCTCG GAAGAATGTC
  GAGAGTTTCC TAGAAGCCTG                                            
  
  R = A/G
  

  
  Note: Sequence in lower case indicates low-complexity or repetitive sequence

  ---

SNP Assays
and
SNP Consensus

Strain alleles of submitted assays, and consensus values for this SNP

Assay ID	Submitter SNP ID	Submitter Handle	Population	ss orientation	Variation Type	LG/J	SM/J
ss321702655	CHEV_5_138080661	CHEVERUD	SCREENING_POP	f	SNP	A	G
SNP Consensus Information
SNP					Consensus Type	LG/J	SM/J
rs13467958					SNP	A	G

Gene/Marker
Associations
and
Function
Classes

MGI genes/markers associated with the SNP

Location: Chr5:137637695 () rs orientation: forward

Symbol	Name	Function Class
Cpgi16844	CpG island 16844	1682 bp proximal
Gm20605	predicted gene 20605	within coordinates
Lrch4	leucine-rich repeats and calponin homology (CH) domain containing 4	within coordinates
Rr622927	regulatory region 622927	1706 bp proximal
Rr622928	regulatory region 622928	1798 bp proximal
Tssr49363	transcription start site region 49363	926 bp downstream
Tssr49364	transcription start site region 49364	1843 bp upstream