About   Help   FAQ
rs13468108 SNP Detail
Summary
  • ID
    rs13468108
  • Variation Type
    SNP
  • Alleles
    C/T
Genome Location and Flanking Sequence
  • Location
    Chr11:98598402 (GRCm39)
  • SNP Orientation to the Genome
    reverse
  • SNP Reference Flanking Sequence
               AGCCCAAGTA CCTTAATCAG GTTGTTGCAG AACCAGTAGA CGCCGCCCAT
    Y
    TGCAGCAGGG TGTCAAGGAT GTGGATGGAG CGGCTGTCCA CCCAGCCCTT           
    
    Y = C/T
    

    Note: Sequence in lower case indicates low-complexity or repetitive sequence
    BLAST SNP flanking sequence against the mouse Genome
SNP Assays
and
SNP Consensus
Strain alleles of submitted assays, and consensus values for this SNP
Legend
Assay ID Submitter
SNP ID
Submitter
Handle
Population
ss orientation
Variation Type
129S1/SvImJ
A/J
AKR/J
BALB/cByJ
BTBR T<+> Itpr3/J
C3H/HeJ
CAST/EiJ
DBA/2J
FVB/NJ
KK/HlJ
MOLF/EiJ
NOD/ShiLtJ
NZW/LacJ
PWD/PhJ
WSB/EiJ
ss37289923 NES08558166 PERLEGEN MM_PANEL2 r SNP A A A A A A G A A A G A A G A
SNP Consensus Information
SNP Consensus Type
129S1/SvImJ
A/J
AKR/J
BALB/cByJ
BTBR T<+> Itpr3/J
C3H/HeJ
CAST/EiJ
DBA/2J
FVB/NJ
KK/HlJ
MOLF/EiJ
NOD/ShiLtJ
NZW/LacJ
PWD/PhJ
WSB/EiJ
rs13468108 SNP T T T T T T C T T T C T T C T
Additional submitted assays for this SNP, where the strain of origin for observed alleles is not specified by the submitter
Assay ID Submitter
SNP ID
Submitter
Handle
Population
ss orientation
Variation
Type
Alleles
ss37289923 NES08558166 PERLEGEN MM_PANEL r SNP A/G
Gene/Marker
Associations
and
Function
Classes
MGI genes/markers associated with the SNP
Location: Chr11:98598402 () rs orientation: reverse
Symbol Name Transcript Protein Function
Class
Allele Residue Codon
Position
AA
Position
Med24 mediator complex subunit 24 Coding-Synonymous
mRNA-UTR
Noncoding-Transcript-Variant
Tssr110580 transcription start site region 110580 1006 bp upstream
Tssr110581 transcription start site region 110581 within coordinates
Tssr110582 transcription start site region 110582 69 bp downstream
Tssr110583 transcription start site region 110583 160 bp downstream
Tssr110584 transcription start site region 110584 181 bp downstream

Contributing Projects:
Mouse Genome Database (MGD), Gene Expression Database (GXD), Mouse Models of Human Cancer database (MMHCdb) (formerly Mouse Tumor Biology (MTB)), Gene Ontology (GO)
Citing These Resources
Funding Information
Warranty Disclaimer, Privacy Notice, Licensing, & Copyright
Send questions and comments to User Support.
last database update
07/22/2025
MGI 6.24
The Jackson Laboratory