rs13468212 SNP Detail

Summary

• ID
  rs13468212
• Variation Type
  SNP
• Alleles
  A/C

• Created in dbSNP Build
  121
• Last Updated in dbSNP Build
  142
• Additional Resources
  JBrowse Genome Browser | Ensembl SNPView | UCSC Browser
  

Genome Location and Flanking Sequence

• Location
  Chr7:132616737 (GRCm39)
• SNP Orientation to the Genome
  reverse

• SNP Reference Flanking Sequence

                                        ACTGA GTCCTACCTG TCCCGGGAAG
  M
  TTTTTATAAC TCACTGGCAT CAAGA                                      
  
  M = A/C
  

  
  Note: Sequence in lower case indicates low-complexity or repetitive sequence

  ---

SNP Assays
and
SNP Consensus

Strain alleles of submitted assays, and consensus values for this SNP

Assay ID	Submitter SNP ID	Submitter Handle	Population	ss orientation	Variation Type	129S1/SvImJ	129X1/SvJ	A/J	AKR/J	BALB/cByJ	BTBR T<+> Itpr3/J	C3H/HeJ	C57BL/6J	CAST/EiJ	DBA/2J	FVB/NJ	KK/HlJ	LG/J	MOLF/EiJ	NOD/ShiLtJ	NZW/LacJ	PWD/PhJ	SM/J	WSB/EiJ
ss46088968	mCV22842884	ABI	CRAMUS_MOUSE	r	SNP		T	T					G		T
ss47272984	NES11562679	PERLEGEN	MM_PANEL2	r	SNP	T		T	T	T	G	T		G	T	T	G		G	T	T	G		G
ss145938488	ENSMUSSNP2431559	ENSEMBL	ENSEMBL_Sanger	r	SNP		T								T
ss322453046	CHEV_7_140206691	CHEVERUD	SCREENING_POP	r	SNP													T					T
SNP Consensus Information
SNP					Consensus Type	129S1/SvImJ	129X1/SvJ	A/J	AKR/J	BALB/cByJ	BTBR T<+> Itpr3/J	C3H/HeJ	C57BL/6J	CAST/EiJ	DBA/2J	FVB/NJ	KK/HlJ	LG/J	MOLF/EiJ	NOD/ShiLtJ	NZW/LacJ	PWD/PhJ	SM/J	WSB/EiJ
rs13468212					SNP	A	A	A	A	A	C	A	C	C	A	A	C	A	C	A	A	C	A	C

Additional submitted assays for this SNP, where the strain of origin for observed alleles is not specified by the submitter

Assay ID	Submitter SNP ID	Submitter Handle	Population	ss orientation	Variation Type	Alleles
ss47272984	NES11562679	PERLEGEN	MM_PANEL	r	SNP	G/T

Gene/Marker
Associations
and
Function
Classes

MGI genes/markers associated with the SNP

Location: Chr7:132616737 () rs orientation: reverse

Symbol	Name	Function Class
Ctbp2	C-terminal binding protein 2	within coordinates
Rr656751	regulatory region 656751	230 bp proximal
Tssr75241	transcription start site region 75241	305 bp downstream
Tssr75242	transcription start site region 75242	461 bp downstream
Tssr75243	transcription start site region 75243	493 bp downstream