rs13468285 SNP Detail

Summary

• ID
  rs13468285
• Variation Type
  SNP
• Alleles
  C/T

• Created in dbSNP Build
  121
• Last Updated in dbSNP Build
  138
• Additional Resources
  JBrowse Genome Browser | Ensembl SNPView | UCSC Browser
  

Genome Location and Flanking Sequence

• Location
  Chr18:36896204 (GRCm39)
• SNP Orientation to the Genome
  forward

• SNP Reference Flanking Sequence

                                        ACCGT GGGCCAGCAT GCCGGGGAGC
  Y
  TGTGGAGGCG CTAGCCCTAT CCCAT                                      
  
  Y = C/T
  

  
  Note: Sequence in lower case indicates low-complexity or repetitive sequence

  ---

SNP Assays
and
SNP Consensus

Strain alleles of submitted assays, and consensus values for this SNP

Assay ID	Submitter SNP ID	Submitter Handle	Population	ss orientation	Variation Type	129S1/SvImJ	A/J	BTBR T<+> Itpr3/J	C3H/HeJ	CAST/EiJ	DBA/2J	FVB/NJ	KK/HlJ	PWD/PhJ	WSB/EiJ
ss49276188	NES12716399	PERLEGEN	MM_PANEL2	f	SNP	T	C	C	C	C	C	T	C	C	C
ss146951383	ENSMUSSNP6969509	ENSEMBL	ENSEMBL_Sanger	f	SNP		C				C
SNP Consensus Information
SNP					Consensus Type	129S1/SvImJ	A/J	BTBR T<+> Itpr3/J	C3H/HeJ	CAST/EiJ	DBA/2J	FVB/NJ	KK/HlJ	PWD/PhJ	WSB/EiJ
rs13468285					SNP	T	C	C	C	C	C	T	C	C	C

Additional submitted assays for this SNP, where the strain of origin for observed alleles is not specified by the submitter

Assay ID	Submitter SNP ID	Submitter Handle	Population	ss orientation	Variation Type	Alleles
ss49276188	NES12716399	PERLEGEN	MM_PANEL	f	SNP	C/T

Gene/Marker
Associations
and
Function
Classes

MGI genes/markers associated with the SNP

Location: Chr18:36896204 () rs orientation: forward

Symbol	Name	Function Class
Cpgi9876	CpG island 9876	1917 bp proximal
Dnd1	DND microRNA-mediated repression inhibitor 1	520 bp downstream
Rr352750	regulatory region 352750	1403 bp distal
Rr352751	regulatory region 352751	1796 bp proximal
Wdr55	WD repeat domain 55	within coordinates