rs13468443 SNP Detail

Summary

• ID
  rs13468443
• Variation Type
  SNP
• Alleles
  A/T

• Created in dbSNP Build
  121
• Last Updated in dbSNP Build
  138
• Additional Resources
  JBrowse Genome Browser | Ensembl SNPView | UCSC Browser | Alliance Variant
  

Genome Location and Flanking Sequence

• Location
  Chr2:164721637 (GRCm39)
• SNP Orientation to the Genome
  reverse

• SNP Reference Flanking Sequence

                                        CGGTG GCGACGGCGG CAGCGGCAGC
  W
  GCGAAGGGAC CCTAGAGGCC GCTCC                                      
  
  W = A/T
  

  
  Note: Sequence in lower case indicates low-complexity or repetitive sequence

  ---

SNP Assays
and
SNP Consensus

Strain alleles of submitted assays, and consensus values for this SNP

Assay ID	Submitter SNP ID	Submitter Handle	Population	ss orientation	Variation Type	129X1/SvJ	A/J	DBA/2J
ss45227305	mCV23132572	ABI	CRAMUS_MOUSE	r	SNP	T	A	A
ss148232709	ENSMUSSNP1824809	ENSEMBL	ENSEMBL_Sanger	r	SNP	T	A	A
SNP Consensus Information
SNP					Consensus Type	129X1/SvJ	A/J	DBA/2J
rs13468443					SNP	A	T	T

Gene/Marker
Associations
and
Function
Classes

MGI genes/markers associated with the SNP

Location: Chr2:164721637 () rs orientation: reverse

Symbol	Name	Function Class
4930445K14Rik	RIKEN cDNA 4930445K14 gene	within coordinates
Cpgi12676	CpG island 12676	within coordinates
Gm75548	predicted gene, 75548	within coordinates
Pcif1	phosphorylated CTD interacting factor 1	Intron
Rr397480	regulatory region 397480	206 bp downstream
Rr397481	regulatory region 397481	86 bp upstream
Rr569748	regulatory region 569748	1803 bp distal
Rr569749	regulatory region 569749	1098 bp distal
Rr569750	regulatory region 569750	1033 bp distal
Rr569751	regulatory region 569751	350 bp distal
Rr569752	regulatory region 569752	within coordinates
Rr569753	regulatory region 569753	314 bp distal
Rr569754	regulatory region 569754	72 bp proximal
Tssr21683	transcription start site region 21683	319 bp downstream
Tssr21684	transcription start site region 21684	299 bp upstream
Tssr21685	transcription start site region 21685	328 bp upstream
Tssr27592	transcription start site region 27592	18 bp downstream