rs13468809 SNP Detail

Summary

• ID
  rs13468809
• Variation Type
  SNP
• Alleles
  C/T

• Created in dbSNP Build
  121
• Last Updated in dbSNP Build
  138
• Additional Resources
  JBrowse Genome Browser | Ensembl SNPView | UCSC Browser
  

Genome Location and Flanking Sequence

• Location
  Chr17:43922827 (GRCm39)
• SNP Orientation to the Genome
  forward

• SNP Reference Flanking Sequence

                                        TCACC CTTTGACGCA GTCACCCAGG
  Y
  CCCGGCTCAG CAACACTCTC CAGGA                                      
  
  Y = C/T
  

  
  Note: Sequence in lower case indicates low-complexity or repetitive sequence

  ---

SNP Assays
and
SNP Consensus

Strain alleles of submitted assays, and consensus values for this SNP

Assay ID	Submitter SNP ID	Submitter Handle	Population	ss orientation	Variation Type	129S1/SvImJ	129X1/SvJ	A/J	AKR/J	BALB/cByJ	BTBR T<+> Itpr3/J	C3H/HeJ	CAST/EiJ	DBA/2J	FVB/NJ	KK/HlJ	LG/J	MOLF/EiJ	NOD/ShiLtJ	NZW/LacJ	PWD/PhJ	SM/J	WSB/EiJ
ss62746808	NES17342872	PERLEGEN	MM_PANEL2	f	SNP	C		C	C	C	C	C	C	C	C	C		C	C	C	C		T
ss145670910	ENSMUSSNP2365640	ENSEMBL	ENSEMBL_Sanger	f	SNP		C							C
ss325395832	CHEV_17_43748885	CHEVERUD	SCREENING_POP	f	SNP												C					T
SNP Consensus Information
SNP					Consensus Type	129S1/SvImJ	129X1/SvJ	A/J	AKR/J	BALB/cByJ	BTBR T<+> Itpr3/J	C3H/HeJ	CAST/EiJ	DBA/2J	FVB/NJ	KK/HlJ	LG/J	MOLF/EiJ	NOD/ShiLtJ	NZW/LacJ	PWD/PhJ	SM/J	WSB/EiJ
rs13468809					SNP	C	C	C	C	C	C	C	C	C	C	C	C	C	C	C	C	T	T

Additional submitted assays for this SNP, where the strain of origin for observed alleles is not specified by the submitter

Assay ID	Submitter SNP ID	Submitter Handle	Population	ss orientation	Variation Type	Alleles
ss62746808	NES17342872	PERLEGEN	MM_PANEL	f	SNP	C/T

Gene/Marker
Associations
and
Function
Classes

MGI genes/markers associated with the SNP

Location: Chr17:43922827 () rs orientation: forward

Symbol	Name	Function Class
Pla2g7	phospholipase A2, group VII (platelet-activating factor acetylhydrolase, plasma)	within coordinates
Rr527133	regulatory region 527133	within coordinates
Rr527134	regulatory region 527134	136 bp distal
Tssr144713	transcription start site region 144713	625 bp downstream
Tssr144714	transcription start site region 144714	540 bp downstream
Tssr144715	transcription start site region 144715	within coordinates
Tssr148139	transcription start site region 148139	91 bp downstream
Tssr148140	transcription start site region 148140	149 bp downstream
Tssr148141	transcription start site region 148141	197 bp downstream
Tssr148142	transcription start site region 148142	246 bp downstream