rs13468888 SNP Detail

Summary

• ID
  rs13468888
• Variation Type
  SNP
• Alleles
  A/G

• Created in dbSNP Build
  121
• Last Updated in dbSNP Build
  142
• Additional Resources
  JBrowse Genome Browser | Ensembl SNPView | UCSC Browser
  

Genome Location and Flanking Sequence

• Location
  Chr12:101050643 (GRCm39)
• SNP Orientation to the Genome
  forward

• SNP Reference Flanking Sequence

                                        AAGTG CTCGCAAAGA CATACCTGAA
  R
  TCATTCACCA ACAAAACTCG GAAGC                                      
  
  R = A/G
  

  
  Note: Sequence in lower case indicates low-complexity or repetitive sequence

  ---

SNP Assays
and
SNP Consensus

Strain alleles of submitted assays, and consensus values for this SNP

Assay ID	Submitter SNP ID	Submitter Handle	Population	ss orientation	Variation Type	129S1/SvImJ	129X1/SvJ	A/J	C57BL/6J	DBA/2J	LG/J	SM/J
ss38945125	mCV24527969	ABI	CRAMUS_MOUSE	f	SNP	G	G	A	A	G
ss137998148	ENSMUSSNP2877287	ENSEMBL	ENSEMBL_Sanger	f	SNP			A		G
ss324139385	CHEV_12_102322594	CHEVERUD	SCREENING_POP	f	SNP						A	G
SNP Consensus Information
SNP					Consensus Type	129S1/SvImJ	129X1/SvJ	A/J	C57BL/6J	DBA/2J	LG/J	SM/J
rs13468888					SNP	G	G	A	A	G	A	G

Gene/Marker
Associations
and
Function
Classes

MGI genes/markers associated with the SNP

Location: Chr12:101050643 () rs orientation: forward

Symbol	Name	Function Class
Cpgi4995	CpG island 4995	146 bp distal
D130020L05Rik	RIKEN cDNA D130020L05 gene	within coordinates
Ppp4r3a	protein phosphatase 4 regulatory subunit 3A	682 bp upstream
Rr387703	regulatory region 387703	within coordinates
Rr471410	regulatory region 471410	1893 bp distal
Rr471411	regulatory region 471411	583 bp distal
Rr471412	regulatory region 471412	within coordinates
Rr471413	regulatory region 471413	76 bp proximal
Tssr114723	transcription start site region 114723	1411 bp downstream
Tssr114724	transcription start site region 114724	641 bp downstream
Tssr114725	transcription start site region 114725	582 bp downstream
Tssr114726	transcription start site region 114726	552 bp downstream
Tssr117352	transcription start site region 117352	897 bp upstream
Tssr117353	transcription start site region 117353	773 bp upstream
Tssr117354	transcription start site region 117354	667 bp upstream