rs13468908 SNP Detail

Summary

• ID
  rs13468908
• Variation Type
  SNP
• Alleles
  A/G

• Created in dbSNP Build
  121
• Last Updated in dbSNP Build
  137
• Additional Resources
  JBrowse Genome Browser | Ensembl SNPView | UCSC Browser
  

Genome Location and Flanking Sequence

• Location
  Chr1:72899634 (GRCm39)
• SNP Orientation to the Genome
  reverse

• SNP Reference Flanking Sequence

             GCAATGAGAT GCTTCTCTTG GATCAAAATC AGGCTGGCAA ATGACAACAG
  R
  CGTGAAGATC CGGGCCTGAG TTGTCCTGGG CTTTCTACCA TCCTCCATCA           
  
  R = A/G
  

  
  Note: Sequence in lower case indicates low-complexity or repetitive sequence

  ---

SNP Assays
and
SNP Consensus

Strain alleles of submitted assays, and consensus values for this SNP

Assay ID	Submitter SNP ID	Submitter Handle	Population	ss orientation	Variation Type	129P2/OlaHsd	129S1/SvImJ	129S5/SvEvBrd	A/J	AKR/J	B10.RIII-H2 H2-T18/(71NS)SnJ	BALB/cByJ	BALB/cJ	BTBR T<+> Itpr3/J	BUB/BnJ	C3H/HeH	C3H/HeJ	C57BL/6J	C57BL/6NJ	C57BL/10J	C57BL/10SnJ	C57BR/cdJ	C57L/J	C58/J	CAST/EiJ	CBA/J	CE/J	CZECHII/EiJ	DBA/1J	DBA/2J	FVB/NJ	I/LnJ	JF1/MsJ	KK/HlJ	LEWES/EiJ	LG/J	LP/J	MA/MyJ	MOLF/EiJ	NOD/ShiLtJ	NON/ShiLtJ	NZB/BlNJ	NZO/HlLtJ	NZW/LacJ	PL/J	PWK/PhJ	QSi3/Ianm	QSi5/Ianm	RF/J	RIIIS/J	SEA/GnJ	SJL/J	SM/J	SPRET/EiJ	ST/bJ	SWR/J	WSB/EiJ	ZALENDE/EiJ
ss350087428	MGP_WTSI_1_72907049	EVA_MGPV3	EVA_MGPV3	r	SNP	T	T	T	T	T	T	T	T	T	T	T	T	T	T	T	T	T	T	T	C	T	T	C	T	T	T	T	C	T	T	T	T	T	T	T	T	T	T	T	T	C	T	T	T	T	T	T	T	T	T	T	T	T
SNP Consensus Information
SNP					Consensus Type	129P2/OlaHsd	129S1/SvImJ	129S5/SvEvBrd	A/J	AKR/J	B10.RIII-H2 H2-T18/(71NS)SnJ	BALB/cByJ	BALB/cJ	BTBR T<+> Itpr3/J	BUB/BnJ	C3H/HeH	C3H/HeJ	C57BL/6J	C57BL/6NJ	C57BL/10J	C57BL/10SnJ	C57BR/cdJ	C57L/J	C58/J	CAST/EiJ	CBA/J	CE/J	CZECHII/EiJ	DBA/1J	DBA/2J	FVB/NJ	I/LnJ	JF1/MsJ	KK/HlJ	LEWES/EiJ	LG/J	LP/J	MA/MyJ	MOLF/EiJ	NOD/ShiLtJ	NON/ShiLtJ	NZB/BlNJ	NZO/HlLtJ	NZW/LacJ	PL/J	PWK/PhJ	QSi3/Ianm	QSi5/Ianm	RF/J	RIIIS/J	SEA/GnJ	SJL/J	SM/J	SPRET/EiJ	ST/bJ	SWR/J	WSB/EiJ	ZALENDE/EiJ
rs13468908					SNP	A	A	A	A	A	A	A	A	A	A	A	A	A	A	A	A	A	A	A	G	A	A	G	A	A	A	A	G	A	A	A	A	A	A	A	A	A	A	A	A	G	A	A	A	A	A	A	A	A	A	A	A	A

Additional submitted assays for this SNP, where the strain of origin for observed alleles is not specified by the submitter

Assay ID	Submitter SNP ID	Submitter Handle	Population	ss orientation	Variation Type	Alleles
ss350087428	MGP_WTSI_1_72907049	SC_MOUSE_GENOMES	SC_MOUSE_GENOMES	r	SNP	C/T

Gene/Marker
Associations
and
Function
Classes

MGI genes/markers associated with the SNP

Location: Chr1:72899634 () rs orientation: reverse

Symbol	Name	Function Class
Cpgi362	CpG island 362	1890 bp proximal
Igfbp5	insulin-like growth factor binding protein 5	within coordinates
Rr34508	regulatory region 34508	435 bp distal
Rr34509	regulatory region 34509	1367 bp proximal
Tssr7342	transcription start site region 7342	1889 bp upstream
Tssr12186	transcription start site region 12186	1986 bp upstream
Tssr12187	transcription start site region 12187	1717 bp upstream
Tssr12188	transcription start site region 12188	1401 bp upstream
Tssr12189	transcription start site region 12189	662 bp upstream
Tssr12190	transcription start site region 12190	166 bp upstream
Tssr12191	transcription start site region 12191	553 bp downstream
Tssr12192	transcription start site region 12192	1021 bp downstream
Tssr12193	transcription start site region 12193	1186 bp downstream
Tssr12194	transcription start site region 12194	1366 bp downstream
Tssr12195	transcription start site region 12195	1726 bp downstream
Tssr12196	transcription start site region 12196	1820 bp downstream
Tssr12197	transcription start site region 12197	1838 bp downstream
Tssr12198	transcription start site region 12198	1854 bp downstream