rs13468925 SNP Detail

Summary

• ID
  rs13468925
• Variation Type
  SNP
• Alleles
  A/C

• Created in dbSNP Build
  121
• Last Updated in dbSNP Build
  137
• Additional Resources
  JBrowse Genome Browser | Ensembl SNPView | UCSC Browser
  

Genome Location and Flanking Sequence

• Location
  Chr1:72900254 (GRCm39)
• SNP Orientation to the Genome
  reverse

• SNP Reference Flanking Sequence

             AATGCAGATG GGAAAAAAAG GTCTGGGCAG GCCAGTGGGT TACAGATGGA
  M
  CTGGCAGGTT TATGTGGTGT GGTGTGAGAC AGTTACTTTC TGCGGGTTGG           
  
  M = A/C
  

  
  Note: Sequence in lower case indicates low-complexity or repetitive sequence

  ---

SNP Assays
and
SNP Consensus

Strain alleles of submitted assays, and consensus values for this SNP

Assay ID	Submitter SNP ID	Submitter Handle	Population	ss orientation	Variation Type	A/J	BALB/cByJ	BTBR T<+> Itpr3/J	C3H/HeJ	CAST/EiJ	FVB/NJ	KK/HlJ	NOD/ShiLtJ	NZW/LacJ	PWD/PhJ	WSB/EiJ
ss60750500	NES16391814	PERLEGEN	MM_PANEL2	r	SNP	T	T	T	T	T	T	T	T	T	G	T
SNP Consensus Information
SNP					Consensus Type	A/J	BALB/cByJ	BTBR T<+> Itpr3/J	C3H/HeJ	CAST/EiJ	FVB/NJ	KK/HlJ	NOD/ShiLtJ	NZW/LacJ	PWD/PhJ	WSB/EiJ
rs13468925					SNP	A	A	A	A	A	A	A	A	A	C	A

Additional submitted assays for this SNP, where the strain of origin for observed alleles is not specified by the submitter

Assay ID	Submitter SNP ID	Submitter Handle	Population	ss orientation	Variation Type	Alleles
ss60750500	NES16391814	PERLEGEN	MM_PANEL	r	SNP	G/T

Gene/Marker
Associations
and
Function
Classes

MGI genes/markers associated with the SNP

Location: Chr1:72900254 () rs orientation: reverse

Symbol	Name	Function Class
Cpgi362	CpG island 362	1270 bp proximal
Igfbp5	insulin-like growth factor binding protein 5	within coordinates
Rr34508	regulatory region 34508	1055 bp distal
Rr34509	regulatory region 34509	747 bp proximal
Tssr7342	transcription start site region 7342	1269 bp upstream
Tssr12189	transcription start site region 12189	1282 bp upstream
Tssr12190	transcription start site region 12190	786 bp upstream
Tssr12191	transcription start site region 12191	56 bp upstream
Tssr12192	transcription start site region 12192	401 bp downstream
Tssr12193	transcription start site region 12193	566 bp downstream
Tssr12194	transcription start site region 12194	746 bp downstream
Tssr12195	transcription start site region 12195	1106 bp downstream
Tssr12196	transcription start site region 12196	1200 bp downstream
Tssr12197	transcription start site region 12197	1218 bp downstream
Tssr12198	transcription start site region 12198	1234 bp downstream