rs13468997 SNP Detail

Summary

• ID
  rs13468997
• Variation Type
  SNP
• Alleles
  C/T

• Created in dbSNP Build
  121
• Last Updated in dbSNP Build
  138
• Additional Resources
  JBrowse Genome Browser | Ensembl SNPView | UCSC Browser | Alliance Variant
  

Genome Location and Flanking Sequence

• Location
  Chr17:25115858 (GRCm39)
• SNP Orientation to the Genome
  forward

• SNP Reference Flanking Sequence

                                        AAGAG CTACTGCGGG AGCATTATGT
  Y
  GAGCTGCGCG AGAAACCCTT CTACA                                      
  
  Y = C/T
  

  
  Note: Sequence in lower case indicates low-complexity or repetitive sequence

  ---

SNP Assays
and
SNP Consensus

Strain alleles of submitted assays, and consensus values for this SNP

Assay ID	Submitter SNP ID	Submitter Handle	Population	ss orientation	Variation Type	129S1/SvImJ	129X1/SvJ	A/J	AKR/J	BALB/cByJ	BTBR T<+> Itpr3/J	C3H/HeJ	C57BL/6J	CAST/EiJ	DBA/2J	FVB/NJ	KK/HlJ	LG/J	MOLF/EiJ	NOD/ShiLtJ	NZW/LacJ	PWD/PhJ	SM/J	WSB/EiJ
ss39534101	mCV25252099	ABI	CRAMUS_MOUSE	f	SNP		C	T					C
ss48357341	NES12239570	PERLEGEN	MM_PANEL2	f	SNP	C			C	C	C	C		C	T	T	T		C	T	C	C		T
ss145369215	ENSMUSSNP3648209	ENSEMBL	ENSEMBL_Sanger	f	SNP		C	T							T
ss325334808	CHEV_17_25033829	CHEVERUD	SCREENING_POP	f	SNP													T					C
SNP Consensus Information
SNP					Consensus Type	129S1/SvImJ	129X1/SvJ	A/J	AKR/J	BALB/cByJ	BTBR T<+> Itpr3/J	C3H/HeJ	C57BL/6J	CAST/EiJ	DBA/2J	FVB/NJ	KK/HlJ	LG/J	MOLF/EiJ	NOD/ShiLtJ	NZW/LacJ	PWD/PhJ	SM/J	WSB/EiJ
rs13468997					SNP	C	C	T	C	C	C	C	C	C	T	T	T	T	C	T	C	C	C	T

Additional submitted assays for this SNP, where the strain of origin for observed alleles is not specified by the submitter

Assay ID	Submitter SNP ID	Submitter Handle	Population	ss orientation	Variation Type	Alleles
ss48357341	NES12239570	PERLEGEN	MM_PANEL	f	SNP	C/T

Gene/Marker
Associations
and
Function
Classes

MGI genes/markers associated with the SNP

Location: Chr17:25115858 () rs orientation: forward

Symbol	Name	Transcript	Protein	Function Class	Allele	Residue	Codon Position	AA Position
Eme2	essential meiotic structure-specific endonuclease subunit 2			1797 bp upstream
Mapk8ip3	mitogen-activated protein kinase 8 interacting protein 3			mRNA-UTR
Mrps34	mitochondrial ribosomal protein S34			mRNA-UTR
Nme3	NME/NM23 nucleoside diphosphate kinase 3			Coding-Synonymous
				Noncoding-Transcript-Variant
Rr523456	regulatory region 523456			1758 bp distal
Rr523457	regulatory region 523457			374 bp distal
Tssr143113	transcription start site region 143113			1717 bp downstream
Tssr143114	transcription start site region 143114			1342 bp downstream
Tssr143115	transcription start site region 143115			354 bp downstream
Tssr143116	transcription start site region 143116			335 bp downstream
Tssr143117	transcription start site region 143117			256 bp downstream
Tssr146794	transcription start site region 146794			1807 bp upstream
Tssr146795	transcription start site region 146795			1399 bp upstream